miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00255;mir-218;AADN02035923.1/118816-118721 9031:Gallus gallus
(chicken)
Length = 96
Score = 168 bits (85), Expect = 1e-41
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 gggttttcctttgtgcttgatctaaccatgtggtagaacaatacaaatggaacatggttc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8 gggttttcctttgtgcttgatctaaccatgtggtagaacaatacaaattgaacatggttc 67
Query: 61 tgtcaagcaccatggaaggctgcatactc 89
|||||||||||||||||||||||||||||
Sbjct: 68 tgtcaagcaccatggaaggctgcatactc 96
>RF00255;mir-218;AAPN01020455.1/68716-68811 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 113 bits (57), Expect = 6e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 5 tttcctttgtgcttgatctaaccatgtggtagaacaatacaaatggaacatggttctgtc 64
|||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct: 12 tttcctttgtgcttgatctaaccatgtggtggaacaatataaacagaacatggttctgtc 71
Query: 65 aagcaccatggaaggct 81
|||||||| ||||||||
Sbjct: 72 aagcaccacggaaggct 88
>RF00255;mir-218;ABRQ01081918.1/2024-2119 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 93.7 bits (47), Expect = 6e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 5 tttcctttgtgcttgatctaaccatgtggtagaacaatacaaatggaacatggttctgtc 64
|||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||
Sbjct: 12 tttcctttgtgcttgatctaaccatgtggtggaacgatggaaacggaacatggttctgtc 71
Query: 65 aagcacc 71
|||||||
Sbjct: 72 aagcacc 78
>RF00255;mir-218;CU550699.5/12753-12848 7955:Danio rerio
(zebrafish)
Length = 96
Score = 69.9 bits (35), Expect = 8e-12
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 gggttttcctttgtgcttgatctaaccatgtggtagaacaatacaaatggaacatggttc 60
|||||||||||||||||||||||||||||||||| | | | | | | |||||||||
Sbjct: 8 gggttttcctttgtgcttgatctaaccatgtggttgcagactcagactaatacatggttc 67
Query: 61 tgtcaagcaccatggaagg 79
|||||||||||||||||||
Sbjct: 68 tgtcaagcaccatggaagg 86
>RF00255;mir-218;AAVX01277185.1/1303-1208 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 69.9 bits (35), Expect = 8e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggtagaacaatacaaatggaacatggttctgtcaagcac 70
|||||||||||||||||||||||| | | ||| ||| ||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggttgcaaggtacgaataaaacatggttctgtcaagcac 77
Query: 71 catggaa 77
|||||||
Sbjct: 78 catggaa 84
>RF00255;mir-218;CAAB01001792.1/26731-26830 31033:Takifugu
rubripes
Length = 100
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 tggaacatggttctgtcaagcaccatggaa 77
||||||||||||||||||||||||||||||
Sbjct: 58 tggaacatggttctgtcaagcaccatggaa 87
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ttcctttgtgcttgatctaaccatgtgg 33
||||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BAAE01009772.1/4377-4476 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 tggaacatggttctgtcaagcaccatggaa 77
||||||||||||||||||||||||||||||
Sbjct: 59 tggaacatggttctgtcaagcaccatggaa 88
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ttcctttgtgcttgatctaaccatgtgg 33
||||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;AANH01008177.1/992-1091 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 gggttttcctttgtgcttgatctaaccatgtg 32
|||| |||||||||||||||||||||||||||
Sbjct: 8 gggtgttcctttgtgcttgatctaaccatgtg 39
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 aacatggttctgtcaagcaccatggaa 77
|||||||||||||||||||||||||||
Sbjct: 61 aacatggttctgtcaagcaccatggaa 87
>RF00255;mir-218;ABRO01284271.1/1059-1152 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 54.0 bits (27), Expect = 5e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 6 ttcctttgtgcttgatctaaccatgtggtagaacaatacaaatggaacatggttctgtca 65
|||| ||||||||||||||||||||||| || | | |||| | |||||||||||||||
Sbjct: 13 ttcccttgtgcttgatctaaccatgtggcag--ctctgcaaacgaaacatggttctgtca 70
Query: 66 agcacc 71
||||||
Sbjct: 71 agcacc 76
>RF00255;mir-218;AADN02015265.1/7283-7378 9031:Gallus gallus
(chicken)
Length = 96
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 aacatggttctgtcaagcaccatggaa 77
|||||||||||||||||||||||||||
Sbjct: 58 aacatggttctgtcaagcaccatggaa 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggt 34
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;CAAB01001870.1/27610-27514 31033:Takifugu
rubripes
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BAAF04054903.1/5141-5043 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BX323583.36/54354-54450 7955:Danio rerio
(zebrafish)
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
>RF00255;mir-218;AAVX01056473.1/1147-1242 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
