miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00664;mir-223;ABQF01018329.1/6784-6677 59729:Taeniopygia
guttata
Length = 108
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgcagagtgtcagtttgtcaaataccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagtccgacactcagtgtgcagagtgtcagtttgtcaaataccc 86
Query: 61 caagtgaggca 71
|||||||||||
Sbjct: 87 caagtgaggca 97
>RF00664;mir-223;AADN02013066.1/26830-26939 9031:Gallus gallus
(chicken)
Length = 110
Score = 103 bits (52), Expect = 3e-22
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtg-cagagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagtttgacactcagtctggcagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||||||||
Sbjct: 87 ccaagtgaggca 98
>RF00664;mir-223;AAFR03059733.1/784-675 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 110
Score = 95.6 bits (48), Expect = 7e-20
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgt-gcagagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccgtgtcgtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||||||||
Sbjct: 87 ccaagtgaggca 98
>RF00664;mir-223;AY866256.1/405-514 9544:Macaca mulatta (rhesus
monkey)
Length = 110
Score = 87.7 bits (44), Expect = 2e-17
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>RF00664;mir-223;AL831708.9/47299-47408 10090:Mus musculus (house
mouse)
Length = 110
Score = 85.7 bits (43), Expect = 7e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtg 66
|||||||
Sbjct: 87 ccaagtg 93
>RF00664;mir-223;AAKN02052886.1/11821-11930 10141:Cavia porcellus
(domestic guinea pig)
Length = 110
Score = 79.8 bits (40), Expect = 4e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>RF00664;mir-223;AAPN01125420.1/2697-2806 9258:Ornithorhynchus
anatinus (platypus)
Length = 110
Score = 75.8 bits (38), Expect = 6e-14
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgca--gagtgtcagtttgtcaaatac 58
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 28 gtgtatttgacaagctgagttggacactccgtgtggtttgagtgtcagtttgtcaaatac 87
Query: 59 cccaagtgaggca 71
|| ||||||||||
Sbjct: 88 cctaagtgaggca 100
>RF00664;mir-223;AANH01000582.1/391608-391499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 110
Score = 75.8 bits (38), Expect = 6e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtg-cagagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| || | | ||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctgtatctctgagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgagg 69
||||||||||
Sbjct: 87 ccaagtgagg 96
>RF00664;mir-223;AANN01684196.1/3693-3802 9365:Erinaceus europaeus
(western European hedgehog)
Length = 110
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgt-gcagagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| | | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttagacactccatatggaagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>RF00664;mir-223;AALT01652710.1/2269-2378 42254:Sorex araneus
(European shrew)
Length = 110
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 gtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacccc 61
|||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||
Sbjct: 29 gtatttgacaagctgaattggacactccatgtggtagagtgtcagtttgtcaaatacccc 88
Query: 62 aagtgaggca 71
||||| ||||
Sbjct: 89 aagtgcggca 98
>RF00664;mir-223;AAQR01675055.1/2409-2518 30611:Otolemur garnettii
(small-eared galago)
Length = 110
Score = 63.9 bits (32), Expect = 2e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaggctgagtggaacactcagtttaatagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>RF00664;mir-223;CAAB01000001.1/273051-272942 31033:Takifugu
rubripes
Length = 110
Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 38 gagtgtcagtttgtcaaataccccaagtgagg 69
||||||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtgagg 96
>RF00664;mir-223;BAAF04035315.1/6268-6159 8090:Oryzias latipes
(Japanese medaka)
Length = 110
Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 38 gagtgtcagtttgtcaaataccccaagtgagg 69
||||||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtgagg 96
>RF00664;mir-223;AAIY01539231.1/5018-5127 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 37 agagtgtcagtttgtcaaataccccaagtg 66
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;BX465863.11/57630-57739 7955:Danio rerio
(zebrafish)
Length = 110
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 gtgtcagtttgtcaaataccccaagtgagg 69
||||||||||||||||||||||||| ||||
Sbjct: 67 gtgtcagtttgtcaaataccccaagagagg 96
>RF00664;mir-223;AAWZ01036640.1/6703-6593 28377:Anolis
carolinensis (green anole)
Length = 111
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 cagagtgtcagtttgtcaaata 57
||||||||||||||||||||||
Sbjct: 64 cagagtgtcagtttgtcaaata 85
