miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01898;mir-363;ABQF01018395.1/1892-1979 59729:Taeniopygia
guttata
Length = 88
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gttttgctgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gttttgctgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaatt 61
Query: 61 gcacggtatccatctgtaaaccgcaag 87
|||||||||||||||||||||||||||
Sbjct: 62 gcacggtatccatctgtaaaccgcaag 88
>RF01898;mir-363;AAHY01210291.1/5295-5208 10090:Mus musculus
(house mouse)
Length = 88
Score = 105 bits (53), Expect = 9e-23
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 1 gttttgctgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaatt 60
||||||||||| || |||||| ||||||||||||||| || || || |||||| ||||||
Sbjct: 2 gttttgctgttatcaggtggaacacgatgcaattttggttggtgtaataggaggaaaatt 61
Query: 61 gcacggtatccatctgtaaaccgca 85
|||||||||||||||||||||||||
Sbjct: 62 gcacggtatccatctgtaaaccgca 86
>RF01898;mir-363;AAIY01805305.1/474-387 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 88
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 23 cacgatgcaattttgattagtttagtaggagaaaaattgcacggtatccatctgtaaacc 82
||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 24 cacgatgcaattttgattagtcaggtaggagaaaaatttcacggtattcatct-aaaacc 82
Query: 83 gcaaga 88
||||||
Sbjct: 83 gcaaga 88
>RF01898;mir-363;BX511227.7/24887-24794 7955:Danio rerio
(zebrafish)
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 aaaaattgcacggtatccatctgtaaaccgc 84
|||||||||||||||||||||||||| ||||
Sbjct: 61 aaaaattgcacggtatccatctgtaatccgc 91
