miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00722;mir-451;ABQF01026376.1/875-804 59729:Taeniopygia guttata
Length = 72
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 gccggcggggaaaccgttaccattactgagtttagtaatggtaacggttctgccgacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gccggcggggaaaccgttaccattactgagtttagtaatggtaacggttctgccgacggc 66
Query: 61 cggcaa 66
||||||
Sbjct: 67 cggcaa 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 aaccgttaccattactgagtttagtaatggtaacggtt 49
|||||||||||||||| | | ||||||||||||||||
Sbjct: 55 aaccgttaccattactaaactcagtaatggtaacggtt 18
>RF00722;mir-451;AADN02025858.1/509-580 9031:Gallus gallus
(chicken)
Length = 72
Score = 91.7 bits (46), Expect = 1e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 8 gggaaaccgttaccattactgagtttagtaatggtaacggttctgc 53
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gggaaaccgttaccattactgagtttagtaatggtaacggttctgc 59
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 aaccgttaccattactgagtttagtaatggtaacggtt 49
|||||||||||||||| | | ||||||||||||||||
Sbjct: 55 aaccgttaccattactaaactcagtaatggtaacggtt 18
>RF00722;mir-451;AAPN01323131.1/127-56 9258:Ornithorhynchus
anatinus (platypus)
Length = 72
Score = 87.7 bits (44), Expect = 2e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 4 ggcggggaaaccgttaccattactgagtttagtaatggtaacggttct 51
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggcgaggaaaccgttaccattactgagtttagtaatggtaacggttct 57
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 aaccgttaccattactgagtttagtaatggtaacggtt 49
|||||||||||||||| | | ||||||||||||||||
Sbjct: 55 aaccgttaccattactaaactcagtaatggtaacggtt 18
>RF00722;mir-451;BX548073.8/159677-159748 7955:Danio rerio
(zebrafish)
Length = 72
Score = 83.8 bits (42), Expect = 3e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 4 ggcggggaaaccgttaccattactgagtttagtaatggtaacggttctgc 53
||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10 ggcggcgaaaccgttaccattactgagtttagtaatggtaagggttctgc 59
>RF00722;mir-451;AAFR03044825.1/5420-5349 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 79.8 bits (40), Expect = 4e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 4 ggcggggaaaccgttaccattactgagtttagtaatggtaacggttct 51
||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 10 ggcggggaaaccgttaccattactgtgtttagtaatggtaagggttct 57
>RF00722;mir-451;AAKN02033337.1/59671-59742 10141:Cavia porcellus
(domestic guinea pig)
Length = 72
Score = 79.8 bits (40), Expect = 4e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 4 ggcggggaaaccgttaccattactgagtttagtaatggtaacggttct 51
|||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10 ggcgaggaaaccgttaccattactgagtttagtaatggtgacggttct 57
>RF00722;mir-451;ABQO010853698.1/772-701 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 9 ggaaaccgttaccattactgagtttagtaatggtaacggttct 51
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 15 ggaaaccgttaccattactgtgtttagtaatggtaacggttct 57
>RF00722;mir-451;AAGU02141945.1/2025-1955 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 12 aaccgttaccattactgagtttagtaatggtaacggttct 51
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17 aaccgttaccattactgagtttagtaatggtaatggttct 56
>RF00722;mir-451;BAAF04033966.1/3754-3826 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 11 aaaccgttaccattactgagtttagtaatggtaacggttc 50
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 17 aaaccgttaccattactgagtttagtaatggtaagggttc 56
>RF00722;mir-451;CAAB01000931.1/60591-60519 31033:Takifugu
rubripes
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 11 aaaccgttaccattactgagttt-agtaatggtaacggttc 50
||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggttc 57
>RF00722;mir-451;AANH01000562.1/126354-126425 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 11 aaaccgttaccattactgagttt-agtaatggtaacggtt 49
||||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggtt 56
