miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00792;mir-490;AADN02006399.1/20529-20400 9031:Gallus gallus
(chicken)
Length = 130
Score = 153 bits (77), Expect = 5e-37
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 1 tcatgagttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacac 60
|||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 18 tcataagttcatggttcgacaccatggatctccaggtgggtcaagattatagagatacac 77
Query: 61 caacctggaggactccatgctgtcgagctgttc 93
||||||||||||||||||||||| |||||||||
Sbjct: 78 caacctggaggactccatgctgttgagctgttc 110
>RF00792;mir-490;AAWZ01012016.1/49356-49227 28377:Anolis
carolinensis (green anole)
Length = 130
Score = 133 bits (67), Expect = 4e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 7 gttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacct 66
|||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 24 gttcatgcctcaacaccatggatctccaggtgggtcaagattatagagaaacaccaacct 83
Query: 67 ggaggactccatgctgtcgagctgttc 93
||||||||||||||||| |||||||||
Sbjct: 84 ggaggactccatgctgttgagctgttc 110
>RF00792;mir-490;AANN01372443.1/381-254 9365:Erinaceus europaeus
(western European hedgehog)
Length = 128
Score = 105 bits (53), Expect = 1e-22
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct: 23 agttcattgttcgacaccatggatctccaggtgggtcacgtt--ttgagatacaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 81 tggaggactccatgctgttgagctgttc 108
>RF00792;mir-490;AC113246.15/27115-26988 10090:Mus musculus (house
mouse)
Length = 128
Score = 105 bits (53), Expect = 1e-22
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||| | | |||| |||||||||||
Sbjct: 23 agttcattgttcgacaccatggatctccaggtgggtcacgtt--tagatatacaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 81 tggaggactccatgctgttgagctgttc 108
>RF00792;mir-490;AAKN02015558.1/78118-77991 10141:Cavia porcellus
(domestic guinea pig)
Length = 128
Score = 105 bits (53), Expect = 1e-22
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
||||||| |||| |||||||||||||||||||||||| | | |||| |||||||||||
Sbjct: 23 agttcattgttcggcaccatggatctccaggtgggtcacggt--tagaaatacaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
||||||||||||||||||||||||||||
Sbjct: 81 tggaggactccatgctgtcgagctgttc 108
>RF00792;mir-490;AAYZ01127575.1/844-971 9978:Ochotona princeps
(American pika)
Length = 128
Score = 103 bits (52), Expect = 4e-22
Identities = 73/79 (92%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 15 ttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacctggaggact 74
|||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 32 ttcggcaccatggatctccaggtgggtcacgtt--tagagatacaccaacctggaggact 89
Query: 75 ccatgctgtcgagctgttc 93
||||||||| |||||||||
Sbjct: 90 ccatgctgttgagctgttc 108
>RF00792;mir-490;AAPN01246488.1/31456-31583 9258:Ornithorhynchus
anatinus (platypus)
Length = 128
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/85 (90%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
|||||| | |||||| |||||||||||||||||||||||| | |||||| ||||||||
Sbjct: 23 agttcacggttcgacgccatggatctccaggtgggtcaaggt--tagagacgcaccaacc 80
Query: 66 tggaggactccatgctgtcgagctg 90
|||||||||||||||||||||||||
Sbjct: 81 tggaggactccatgctgtcgagctg 105
>RF00792;mir-490;ABRQ01197453.1/2148-2275 9813:Procavia capensis
(cape rock hyrax)
Length = 128
Score = 97.6 bits (49), Expect = 2e-20
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 10 catgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacctgga 69
|||| ||||||||||||||||||||||||||||| | | || || ||||||||||||||
Sbjct: 27 catggttcgacaccatggatctccaggtgggtcacggt--tacaggtacaccaacctgga 84
Query: 70 ggactccatgctgtcgagctgttc 93
|||||||||||||| |||||||||
Sbjct: 85 ggactccatgctgttgagctgttc 108
>RF00792;mir-490;ABQO010519113.1/1706-1579 9315:Macropus eugenii
(tammar wallaby)
Length = 128
Score = 89.7 bits (45), Expect = 6e-18
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
|||||||| ||||||||||||||||||||||| ||||||| | |||| || |||||||
Sbjct: 23 agttcatggttcgacaccatggatctccaggtaggtcaaggt--tagaaatgtaccaacc 80
Query: 66 tggaggactccatgctgtcgagctgttc 93
||||| |||||||||||| |||||||||
Sbjct: 81 tggagtactccatgctgttgagctgttc 108
>RF00792;mir-490;AAQQ01772082.1/825-951 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 127
Score = 89.7 bits (45), Expect = 6e-18
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
||||||| ||||||||||||||||||||||||||||| | | ||||| | |||||||
Sbjct: 22 agttcattgttcgacaccatggatctccaggtgggtcacgtt--tagaggttaaccaacc 79
Query: 66 tggaggactccatgctgtcgagctgttc 93
|||||||||||||||||| |||||||||
Sbjct: 80 tggaggactccatgctgttgagctgttc 107
>RF00792;mir-490;ABRP01133569.1/2630-2749 132908:Pteropus vampyrus
(large flying fox)
Length = 120
Score = 60.0 bits (30), Expect = 5e-09
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 52 gagatacaccaacctggaggactccatgctgtcgagctgttc 93
||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 60 gagatacaccaacctggaggactgcatgctgt-gagctgttc 100
>RF00792;mir-490;AAFR03031771.1/89803-89676 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 128
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/67 (85%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 catggatctccaggtgggtcaagataatagagatacaccaacctggaggactccatgctg 82
|||||||||| ||||||||||| | ||| ||| ||||||||||||||||||| ||||
Sbjct: 40 catggatctcttggtgggtcaagtt--taggaatataccaacctggaggactccaagctg 97
Query: 83 tcgagct 89
| |||||
Sbjct: 98 ttgagct 104
