miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 125 bits (63), Expect = 7e-29
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaaccttcta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaaccttcta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 85.7 bits (43), Expect = 6e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| |||||||| |||||| |||||| || ||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 85.7 bits (43), Expect = 6e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| ||||||| ||||| | ||||||||||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 77.8 bits (39), Expect = 1e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| ||||||||||||| | ||||| |||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| ||||||| ||||| | ||||| |||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| ||| ||| |||||||| ||| |||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccct-gggagttaactgtacaaccttct 59
|||||||||||||||||||||||||| | ||||| | |||| |||||||||| ||| ||
Sbjct: 7 tgaggtagtaggttgtatggtttagaataacaccatcaggagataactgtacagcctcct 66
Query: 60 agctttcc 67
||||||||
Sbjct: 67 agctttcc 74
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 61.9 bits (31), Expect = 9e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| ||||||| | ||| | |||| |||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 61.9 bits (31), Expect = 9e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| ||| ||||| ||||| |||| |||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 58.0 bits (29), Expect = 1e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
||||||||| |||||||| ||| ||| | |||||| ||||| | |||||||||||| |||
Sbjct: 7 tgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaacctccta 66
Query: 61 gcttt 65
|||||
Sbjct: 67 gcttt 71
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 38 ggagttaactgtacaaccttctagctttcc 67
|||| |||||||||||||||||||||||||
Sbjct: 47 ggagataactgtacaaccttctagctttcc 76
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 taactgtacaaccttctagctttcc 67
|||||||||||||||||||||||||
Sbjct: 52 taactgtacaaccttctagctttcc 76
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 aactgtacaaccttctagctttcc 67
||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttcc 75
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| ||| ||||| || || |||| | |||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttagagttacaccctgggagttaactgtacaaccttcta 60
|||||||||||||||||| ||| ||| |||| | | |||| ||||||| |||||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaagtacatcattggagataactgtgcaacctgcta 66
Query: 61 gct 63
|||
Sbjct: 67 gct 69
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttaga 26
|||||||||||||||||| |||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttaga 26
|||||||||||||||||| |||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtatggtttaga 26
|||||||||||||||||| |||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 34/37 (91%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 1 tgaggtagtaggttgtat-ggtttagagttacaccct 36
|||||||||||||||||| | ||||| ||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttttagggttacaccct 43
