miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;ABRQ01276450.1/1153-1077 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 125 bits (63), Expect = 7e-29
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;ABRO01282771.1/6704-6628 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 7 tgaggtaggaggttgtatagttgaggaagacacccaaggagatcactatacggcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
|||||||| |||||||||||||||| | |||||| | ||||| ||| ||| |||||||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 50.1 bits (25), Expect = 3e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
|||||||| ||||||||||||||| | ||||||| |||||| ||| ||| |||||||
Sbjct: 7 tgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaacctccta 66
Query: 61 gcttt 65
|||||
Sbjct: 67 gcttt 71
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 5e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
|||||||| ||||||||||||| || |||||| |||||| ||| ||| ||||||||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcctccta 66
Query: 61 gctttcc 67
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgaggtaggaggttgtatagttgag 25
|||||||| ||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttgag 31
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgaggtaggaggttgtatagttgag 25
|||||||| ||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttgag 31
