miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02056441.1/23079-23166 9031:Gallus gallus
(chicken)
Length = 88
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 tgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataactg 66
Query: 61 tacaggccactgccttgcc 79
|||||||||||||||||||
Sbjct: 67 tacaggccactgccttgcc 85
>RF00027;let-7;AAVX01039717.1/937-849 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 83.8 bits (42), Expect = 3e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 2 gaggtagtagtttgtacagtttgagggtctatgataccacccggtaca-ggagataactg 60
|||||||| ||||||||||||||||||| | ||| |||||||||| | |||||||||||
Sbjct: 8 gaggtagttgtttgtacagtttgagggtttgtgacaccacccggttgatggagataactg 67
Query: 61 tacaggccactgccttgc 78
|||| |||||||||||||
Sbjct: 68 tacaagccactgccttgc 85
>RF00027;let-7;BAAE01044355.1/4683-4770 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1 tgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataactg 60
||||||||| ||||||||||||||||||||| |||| | |||| |||||||| ||||||
Sbjct: 7 tgaggtagttgtttgtacagtttgagggtctgtgattctgcccgatacaggagctaactg 66
Query: 61 tacaggccactgccttgcc 79
|||| | |||||||||||
Sbjct: 67 tacaagtgactgccttgcc 85
>RF00027;let-7;AANH01007698.1/145537-145624 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tgaggtagtagtttgtacagtttgagggtct 31
||||||||| |||||||||||||||||||||
Sbjct: 7 tgaggtagttgtttgtacagtttgagggtct 37
