miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11 catacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 101 bits (51), Expect = 9e-22
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 catacttctttataatcccatatggacctgctaagctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 11 catacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 77.8 bits (39), Expect = 1e-14
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 11 catacttctttatatgcccatatggagct-cggagctatggaatgtaaagaagtatgta 68
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 77.8 bits (39), Expect = 1e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
|||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 11 catacttctttatacgcccatatggacttgctgcactatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 61.9 bits (31), Expect = 7e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
||||||||||||| | |||||||| || | | | |||||||||||||||||||||||||
Sbjct: 11 catacttctttatgtacccatatgaacatacaaggctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 61.9 bits (31), Expect = 7e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
||||||||||||| | |||||||| || | | | |||||||||||||||||||||||||
Sbjct: 11 catacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 61.9 bits (31), Expect = 7e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||| || | | ||||||||||||||||||||||||
Sbjct: 11 catacttctttatatgcccatatgaacacgagcaactatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 61.9 bits (31), Expect = 7e-10
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
|||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct: 11 catacttcttcatatgcccatatgaaa-tgctttgctatggaatgtaaagaagtatgta 68
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
||||||||||||| | |||||||| || | | |||||||||||||||||||||||||
Sbjct: 11 catacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 33 aagctatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||||||
Sbjct: 44 aagctatggaatgtaaagaagtatgta 70
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 54.0 bits (27), Expect = 2e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacctgctaagctatggaatgtaaagaagtatgta 59
||||||||||||||| |||||||| || | | |||||||||||||||||||||||||
Sbjct: 11 catacttctttatatacccatatgaacttaaca-gctatggaatgtaaagaagtatgta 68
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 52.0 bits (26), Expect = 7e-07
Identities = 54/61 (88%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatggacct--gctaagctatggaatgtaaagaagtatgt 58
||||||||||||| | ||||||||||| | | ||| |||||||||||||||||||||||
Sbjct: 11 catacttctttatgtacccatatggacatatgataa-ctatggaatgtaaagaagtatgt 69
Query: 59 a 59
|
Sbjct: 70 a 70
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 gctatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||||
Sbjct: 44 gctatggaatgtaaagaagtatgta 68
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 ctatggaatgtaaagaagtatgta 59
||||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatgta 72
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgta 68
>RF00103;mir-1;AAWZ01040028.1/1478-1399 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatgga 26
|||||||||| |||||||||||||||
Sbjct: 12 catacttcttcatatgcccatatgga 37
>RF00103;mir-1;AADN02043827.1/39065-38987 9031:Gallus gallus
(chicken)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatatgga 26
|||||||||| |||||||||||||||
Sbjct: 11 catacttcttcatatgcccatatgga 36
>RF00103;mir-1;DQ066652.1/2-78 8364:Xenopus (Silurana) tropicalis
(western clawed frog)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccata 22
||||||||||||||||||||||
Sbjct: 11 catacttctttatatgcccata 32
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 gctatggaatgtaaagaagtatgta 59
|||||||||||| ||||||||||||
Sbjct: 45 gctatggaatgttaagaagtatgta 69
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ctatggaatgtaaagaagtatg 57
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ctatggaatgtaaagaagtatg 57
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 68 tatggaatgtaaagaagtatg 88
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgtaaagaagtatg 57
|||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatg 70
