miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 101 bits (51), Expect = 9e-22
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaaaactg 67
>RF00245;mir-19;ABRR01417027.1/645-719 30538:Lama pacos (alpaca)
Length = 75
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaaaactg 59
|||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 9 gttttgcaggtttgtctccagctgtgtgatattctgctgtgcaaatccaggcaacactg 67
>RF00245;mir-19;AAPN01121175.1/4459-4405 9258:Ornithorhynchus
anatinus (platypus)
Length = 55
Score = 83.8 bits (42), Expect = 2e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 3 tttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatcc 48
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tttgcaggtttgcatccagctgtgtggtattctgctgtgcaaatcc 46
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 71.9 bits (36), Expect = 8e-13
Identities = 46/48 (95%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 12 ttgcatccagctgtgtgatattctgctgtgcaaatccatgcaaaactg 59
||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 18 ttgcatccagctgtgtgatct-ctgctgtgcaaatccatgcaaaactg 64
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 34 ctgctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||||
Sbjct: 42 ctgctgtgcaaatccatgcaaaactg 67
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tgctgtgcaaatccatgcaaaactg 59
|||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaactg 65
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tgctgtgcaaatccatgcaaaactg 59
|||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactg 66
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tgctgtgcaaatccatgcaaaactg 59
|||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactg 66
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tgctgtgcaaatccatgcaaaactg 59
|||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaactg 65
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tgctgtgcaaatccatgcaaaactg 59
|||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaactg 68
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tgctgtgcaaatccatgcaaaactg 59
|||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaactg 68
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 46 gctgtgcaaatccatgcaaaactg 69
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactg 72
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactg 72
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 48 gctgtgcaaatccatgcaaaactg 71
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactg 72
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactg 72
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 51 gctgtgcaaatccatgcaaaactg 74
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactg 72
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactg 66
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 47 gctgtgcaaatccatgcaaaactg 70
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactg 68
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 tgctgtgcaaatccatgcaaaact 58
||||||||||||||||||||||||
Sbjct: 43 tgctgtgcaaatccatgcaaaact 66
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 gctgtgcaaatccatgcaaaactg 59
||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactg 65
>RF00245;mir-19;AAPN01215107.1/8247-8320 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 46.1 bits (23), Expect = 4e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaaaactg 59
|||||||||||| |||||||||||| || || ||||| |||||| ||||||||||||
Sbjct: 9 gttttgcaggttggcatccagctgtatggtactctgccaagcaaat-catgcaaaactg 66
>RF00245;mir-19;AANH01005996.1/21250-21325 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 tctgctgtgcaaatccatgcaaa 55
|||||||||||||||||||||||
Sbjct: 42 tctgctgtgcaaatccatgcaaa 64
>RF00245;mir-19;BAAF04054686.1/763-838 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35 tgctgtgcaaatccatgcaaa 55
|||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaa 64
