miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatgcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatgcaaa 68
Query: 61 actg 64
||||
Sbjct: 69 actg 72
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 87.7 bits (44), Expect = 1e-17
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatgcaaa 60
|||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatttcagcgta-ttgtgtatatcaggctgtgcaaatccatgcaaa 67
Query: 61 actg 64
||||
Sbjct: 68 actg 71
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatgcaaa 60
||||||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 9 gttttgcagatttgcagttcagcgtatatgtgaatatatggctgtgcaaatccatgcaaa 68
Query: 61 actg 64
||||
Sbjct: 69 actg 72
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 71.9 bits (36), Expect = 9e-13
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatgcaaa 60
|||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatttcagcgtatacctgtatacatggctgtgcaaatccatgcaaa 68
Query: 61 actg 64
||||
Sbjct: 69 actg 72
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 63.9 bits (32), Expect = 2e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatgcaaa 60
|||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatttcagcgtatataaatctacagggctgtgcaaatccatgcaaa 68
Query: 61 actg 64
||||
Sbjct: 69 actg 72
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 56.0 bits (28), Expect = 5e-08
Identities = 57/65 (87%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagcgtacttgtgcata-tagggctgtgcaaatccatgcaa 59
||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatttcagcataca----cataatacggctgtgcaaatccatgcaa 64
Query: 60 aactg 64
|||||
Sbjct: 65 aactg 69
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagcgta 26
||||||||||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatttcagcgta 34
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggctgtgcaaatccatgcaaaactg 64
|||||||||||||||||||||||||
Sbjct: 48 ggctgtgcaaatccatgcaaaactg 72
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagcgta 26
||||||||||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatttcagcgta 34
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggctgtgcaaatccatgcaaaactg 64
|||||||||||||||||||||||||
Sbjct: 50 ggctgtgcaaatccatgcaaaactg 74
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 35 tatagggctgtgcaaatccatgcaaaactg 64
|||| |||||||||||||||||||||||||
Sbjct: 37 tatatggctgtgcaaatccatgcaaaactg 66
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 52.0 bits (26), Expect = 8e-07
Identities = 57/66 (86%), Gaps = 6/66 (9%)
Strand = Plus / Plus
Query: 1 gttttgcaggtttgcatttcagc--gtacttgtgcatatagggctgtgcaaatccatgca 58
||||||||||||||||||||||| ||| || || || |||||||||||||||||||
Sbjct: 9 gttttgcaggtttgcatttcagcatgtatttatgtat----ggctgtgcaaatccatgca 64
Query: 59 aaactg 64
||||||
Sbjct: 65 aaactg 70
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactg 65
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 41 gctgtgcaaatccatgcaaaactg 64
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactg 66
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaactg 67
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactg 68
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactg 66
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactg 65
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactg 65
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactg 68
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactg 68
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaactg 64
||||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaactg 67
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 gctgtgcaaatccatgcaaaact 63
|||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaact 66
