miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AAEX02004024.1/7928-8010 9615:Canis lupus
familiaris (dog)
Length = 83
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 gtaccaaagtgctcacagtgcaggtagtctgggcttttctctactgtagtgtgggcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtaccaaagtgctcacagtgcaggtagtctgggcttttctctactgtagtgtgggcactt 68
Query: 61 ccggtaac 68
||||||||
Sbjct: 69 ccggtaac 76
>RF00051;mir-17;FP015951.3/28915-28833 9823:Sus scrofa (pig)
Length = 83
Score = 75.8 bits (38), Expect = 6e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 gtaccaaagtgctcacagtgcaggtagtctgggcttttctctactgtagtgtgggcactt 60
||||||||||||||||||||||||||| | || || ||||||||||||||||||||||
Sbjct: 9 gtaccaaagtgctcacagtgcaggtaggttttgcattactctactgtagtgtgggcactt 68
Query: 61 cc 62
||
Sbjct: 69 cc 70
>RF00051;mir-17;ABRQ01318667.1/1268-1186 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 71.9 bits (36), Expect = 9e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1 gtaccaaagtgctcacagtgcaggtagtctgggcttttctctactgtagtgtgggcactt 60
||||||||||||||| |||||||||||| ||||| || |||||||| |||| ||||||||
Sbjct: 9 gtaccaaagtgctcatagtgcaggtagtttgggcattactctactgcagtgcgggcactt 68
>RF00051;mir-17;ABRO01259691.1/1321-1238 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 61.9 bits (31), Expect = 9e-10
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 gtaccaaagtgctcacagtgcaggtagtct-gggcttttctctactgtagtgtgggcact 59
||||||||||||||| |||||| ||||| | |||| || |||||||||||| ||||||||
Sbjct: 9 gtaccaaagtgctcatagtgcacgtagttttgggcattgctctactgtagtatgggcact 68
Query: 60 tcc 62
|||
Sbjct: 69 tcc 71
>RF00051;mir-17;AY866359.1/938-1020 9593:Gorilla gorilla (Western
Gorilla)
Length = 83
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 1 gtaccaaagtgctcacagtgcaggtagtctgggcttttctctactgtagtgtgggcactt 60
||||||||||||||| |||||||||||| | ||| | |||||||||| | |||||||||
Sbjct: 9 gtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtaatatgggcactt 68
Query: 61 cc 62
||
Sbjct: 69 cc 70
>RF00051;mir-17;BX511227.7/25357-25277 7955:Danio rerio
(zebrafish)
Length = 81
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 ccaaagtgctcacagtgcaggtagt 28
|||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1896-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gtaccaaagtgctcacagtgcaggtagt 28
||||||||||||||| ||||||||||||
Sbjct: 9 gtaccaaagtgctcatagtgcaggtagt 36
>RF00051;mir-17;AAGW01169230.1/2042-2124 9986:Oryctolagus
cuniculus (rabbit)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gtaccaaagtgctcacagtgcaggtagt 28
||||||||||||||| ||||||||||||
Sbjct: 9 gtaccaaagtgctcatagtgcaggtagt 36
>RF00051;mir-17;AAIY01238597.1/3382-3300 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gtaccaaagtgctcacagtgcaggtagt 28
||||||||||||||| ||||||||||||
Sbjct: 9 gtaccaaagtgctcatagtgcaggtagt 36
>RF00051;mir-17;AANH01005996.1/21109-21189 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ccaaagtgctcacagtgcaggtag 27
||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtag 35
>RF00051;mir-17;AAFR03056382.1/2050-2132 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 ccaaagtgctcacagtgcaggtagt 28
|||||||||||| ||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagt 36
>RF00051;mir-17;BX571778.7/42610-42528 10090:Mus musculus (house
mouse)
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 ccaaagtgctcacagtgcaggtagt 28
|||||||||||| ||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagt 36
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 ccaaagtgctcacagtgcaggtagt 28
|||||||||| ||||||||||||||
Sbjct: 12 ccaaagtgcttacagtgcaggtagt 36
