miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 agttcttcagtggcaagctttatgtcctgacccagctaaagctgccagttgaagaactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcctgacccagctaaagctgccagttgaagaactgt 74
>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 agttcttcagtggcaagctttatgtcctgacccagctaaagctgccagttgaagaactg 59
|||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 15 agttcttcagtggcgagctttatgtcttgtcccagctaaagctgccagttgaagaactg 73
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 65.9 bits (33), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 agttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttgaagaac 57
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaagaac 74
Query: 58 tgt 60
|||
Sbjct: 75 tgt 77
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 58.0 bits (29), Expect = 1e-08
Identities = 55/63 (87%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 agttcttcagtggcaagctttatgtcct---gacccagctaaagctgccagttgaagaac 57
||||||||| ||||||||||||||| || | ||||||||||||||||| ||||||||
Sbjct: 15 agttcttcactggcaagctttatgttctcgtgcaccagctaaagctgccagctgaagaac 74
Query: 58 tgt 60
|||
Sbjct: 75 tgt 77
>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
nigroviridis
Length = 89
Score = 50.1 bits (25), Expect = 3e-06
Identities = 55/63 (87%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 2 gttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttgaagaac 57
|||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct: 16 gttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttgaagagc 75
Query: 58 tgt 60
|||
Sbjct: 76 tgt 78
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 gctaaagctgccagttgaagaactgt 60
|||||||||||||| |||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactgt 77
>RF00653;mir-22;BAAF04066287.1/5156-5069 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 gctaaagctgccagttgaagaactg 59
|||||||||||||| ||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactg 76
