miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 105 bits (53), Expect = 6e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 1 agctggtttcatatggtggtttagatttaaatagtgattgtctagcaccatttgaaatca 60
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 5 agctggtttcatatggtggtttagatttaactattcattgtctagcaccatttgaaatca 64
Query: 61 gtgtt 65
|||||
Sbjct: 65 gtgtt 69
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 58.0 bits (29), Expect = 1e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1 agctggtttcatatggtggtttagatttaaatagtgattgtctagcaccatttgaaatca 60
|||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 4 agctggtttcctatggtggtttagatgtaactcagctgtgtctagcaccatttgaaatca 63
Query: 61 gtgtt 65
|||||
Sbjct: 64 gtgtt 68
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 56.0 bits (28), Expect = 5e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 ttgtctagcaccatttgaaatcagtgtt 65
||||||||||||||||||||||||||||
Sbjct: 42 ttgtctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 gtctagcaccatttgaaatcagtgtt 65
||||||||||||||||||||||||||
Sbjct: 44 gtctagcaccatttgaaatcagtgtt 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 gctggtttcatatggtggtttagat 26
|||||||||| ||||||||||||||
Sbjct: 6 gctggtttcacatggtggtttagat 30
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 gtctagcaccatttgaaatcagtgtt 65
||||||||||||||||||||||||||
Sbjct: 44 gtctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
|||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgtt 70
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
|||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
|||||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcagtgtt 67
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
|||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgtt 70
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
|||||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcagtgtt 67
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
|||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgtt 70
>RF00074;mir-29;ABRR01582801.1/1311-1240 30538:Lama pacos (alpaca)
Length = 72
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
|||||||||||||||||||| ||||
Sbjct: 46 tctagcaccatttgaaatcaatgtt 70
>RF00074;mir-29;AADN02044957.1/857-794 9031:Gallus gallus
(chicken)
Length = 64
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tgtctagcaccatttgaaatc 59
|||||||||||||||||||||
Sbjct: 38 tgtctagcaccatttgaaatc 58
>RF00074;mir-29;CAAB01000294.1/99403-99473 31033:Takifugu rubripes
Length = 71
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
||||||||||| |||||||||||||
Sbjct: 45 tctagcaccatgtgaaatcagtgtt 69
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
||||||||||||||||||| |||||
Sbjct: 43 tctagcaccatttgaaatcggtgtt 67
>RF00074;mir-29;AANH01007454.1/2347-2415 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tgtctagcaccatttgaaatc 59
|||||||||||||||||||||
Sbjct: 41 tgtctagcaccatttgaaatc 61
>RF00074;mir-29;AANH01001435.1/148652-148722 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
||||||||||| |||||||||||||
Sbjct: 45 tctagcaccatatgaaatcagtgtt 69
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 41 tctagcaccatttgaaatcagtgtt 65
||||||||||||||||||| |||||
Sbjct: 43 tctagcaccatttgaaatcggtgtt 67
>RF00074;mir-29;BAAF04011924.1/411-473 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tgtctagcaccatttgaaatc 59
|||||||||||||||||||||
Sbjct: 37 tgtctagcaccatttgaaatc 57
>RF00074;mir-29;ABLF01034895.1/6534-6605 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 ttgtctagcaccatttgaaatcagt 62
|||||||||||||||||||| ||||
Sbjct: 45 ttgtctagcaccatttgaaaccagt 69
