miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;ABRQ01173586.1/2990-2912 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgccatc 59
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 aggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatattgccatc 72
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 71.9 bits (36), Expect = 8e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgcc 56
|||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgatgagttaagaacctgctatgccaacatattgcc 69
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgccatc 59
|||||||||| ||||||||||||| | || | |||||||||||||||||||||| ||||
Sbjct: 14 aggcaagatgttggcatagctgttaacctaaaaacctgctatgccaacatattgtcatc 72
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 61.9 bits (31), Expect = 7e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgccatc 59
|||||||||| ||||||||||||||| | ||||||||||||||| |||| ||| ||||
Sbjct: 14 aggcaagatgttggcatagctgttgagttaagaacctgctatgccgacatgttgtcatc 72
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 46.1 bits (23), Expect = 4e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 aggcaagatgctggcatagctgttgaactgaga-acctgctatgccaacatattgccat 58
|||||||||| ||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccat 72
>RF00661;mir-31;CAAE01014681.1/977367-977288 99883:Tetraodon
nigroviridis
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aggcaagatgctggcatagctg 22
||||||||||||||||||||||
Sbjct: 14 aggcaagatgctggcatagctg 35
>RF00661;mir-31;BAAE01170693.1/1745-1803 8090:Oryzias latipes
(Japanese medaka)
Length = 59
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 ggcaagatgctggcatagctgttgaa 27
||||||||| ||||||||||||||||
Sbjct: 1 ggcaagatgttggcatagctgttgaa 26
