miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAKN02045137.1/14420-14354 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 109 bits (55), Expect = 6e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 11 ccgcggtgcattgctgttgcattgcacgtgagtgacgcgggtgcagtgcctcggcagtgc 70
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 1 ccgcggtgcattgctgttgcattgcatgtgtgtgaggcgggtgcagtgcctcggcagtgc 60
Query: 71 agcccgg 77
|||||||
Sbjct: 61 agcccgg 67
>RF00667;mir-33;AAGU02562745.1/2088-2024 9785:Loxodonta africana
(African savanna elephant)
Length = 65
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 ggtgcattgctgttgcattgcacgtgagtgacgcgggtgcagtgcctcggcagtgcagcc 74
|||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 5 ggtgcattgctgttgcattgcacgtgtgtg--gcgggtgcagtgcctcagcagtgcagcc 62
Query: 75 cgg 77
|||
Sbjct: 63 cgg 65
>RF00667;mir-33;AAYZ01315512.1/404-338 9978:Ochotona princeps
(American pika)
Length = 67
Score = 73.8 bits (37), Expect = 4e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 17 tgcattgctgttgcattgcacgtgagtgacgcgggtgcagtgcctcggcagtgcagcccg 76
|||||||||| ||||||||||||| | | || |||||||||||||||||||||||||||
Sbjct: 7 tgcattgctggtgcattgcacgtgtgcgcagcaggtgcagtgcctcggcagtgcagcccg 66
Query: 77 g 77
|
Sbjct: 67 g 67
>RF00667;mir-33;AAIY01371081.1/711-777 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 69.9 bits (35), Expect = 6e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 15 ggtgcattgctgttgcattgcacgtgagtgacgcgggtgcagtgcctcggcagtgcagcc 74
|||||||||| ||||||||||||||| ||| | |||||||||| ||||||||||||||
Sbjct: 5 ggtgcattgcggttgcattgcacgtgtgtgcgccaggtgcagtgcttcggcagtgcagcc 64
Query: 75 cgg 77
|||
Sbjct: 65 cgg 67
>RF00667;mir-33;AAQQ01305246.1/1096-1158 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 63
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 17 tgcattgctgttgcattgcacgtgagtgacgcgggtgcagtgcctcggcagtgcagcccg 76
|||||||||| ||||||||||| | ||| |||||||||||||||| |||||||||||||
Sbjct: 5 tgcattgctgctgcattgcacgcgtgtg--gcgggtgcagtgcctcagcagtgcagcccg 62
Query: 77 g 77
|
Sbjct: 63 g 63
>RF00667;mir-33;ABJB011070400.1/4565-4636 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 gcggtgcattgctgttgcattgcacgt 39
|||||||||||| ||||||||||||||
Sbjct: 3 gcggtgcattgcagttgcattgcacgt 29
