miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 77.8 bits (39), Expect = 1e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 5 tgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtcccggcctgt 59
||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 15 tgggaccggtcgcaatgctgtgtgtctgtgtggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 75.8 bits (38), Expect = 5e-14
Identities = 56/61 (91%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 aggttgggatcggttgcaatgctgtgtttct--gtatggtattgcacttgtcccggcctg 58
|||||||||| || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 aggttgggatttgtcgcaatgctgtgtttctctgtatggtattgcacttgtcccggcctg 70
Query: 59 t 59
|
Sbjct: 71 t 71
>RF00464;mir-92;ABRR01417027.1/760-838 30538:Lama pacos (alpaca)
Length = 79
Score = 71.9 bits (36), Expect = 8e-13
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 aggttgggatcggttgcaa-tgctgtgtttctgtatggtattgcacttgtcccggcctgt 59
||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||
Sbjct: 11 aggttgggatcggttgcaaatgctgtgttcctgtatggagttgaacttgtcccggcctgt 70
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 aggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtcccggcctgt 59
||||||||||| |||||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 11 aggttgggatcagttgcaatgctgtgcgtttctgtggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANN01710722.1/2155-2112 9365:Erinaceus europaeus
(western European hedgehog)
Length = 44
Score = 65.9 bits (33), Expect = 5e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 19 atgctgtgtttctgtatggtattgcacttgtcc 51
|||||||||||||||||||||||||||||||||
Sbjct: 12 atgctgtgtttctgtatggtattgcacttgtcc 44
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 61.9 bits (31), Expect = 7e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 aggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtcccggcctgt 59
|||||||||| ||| |||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 11 aggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AAPN01258105.1/457-380 9258:Ornithorhynchus
anatinus (platypus)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 1 aggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtcccggcctgt 59
||||||||||| ||||||||||| ||||| | || ||||||| ||||| |||||||||
Sbjct: 11 aggttgggatcagttgcaatgctttgtttgtctacagtattgcgcttgttccggcctgt 69
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tggtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||||
Sbjct: 45 tggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tggtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||||
Sbjct: 46 tggtattgcacttgtcccggcctgt 70
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 ggtattgcacttgtcccggcctgt 59
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 ggtattgcacttgtcccggcctgt 59
||||||||||||||||||||||||
Sbjct: 46 ggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 ggtattgcacttgtcccggcctgt 59
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 ggtattgcacttgtcccggcctgt 59
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;AAPN01101011.1/3771-3698 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 46.1 bits (23), Expect = 4e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 aggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtcccggcctgt 59
|||||| |||| |||||||||| ||||| | | |||||||||||||||||| ||||||
Sbjct: 11 aggttgagatcaattgcaatgctttgttt-tctgtggtattgcacttgtcccagcctgt 68
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 53 gtattgcacttgtcccggcctgt 75
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 53 gtattgcacttgtcccggcctgt 75
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 50 gtattgcacttgtcccggcctgt 72
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 51 gtattgcacttgtcccggcctgt 73
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 50 gtattgcacttgtcccggcctgt 72
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctgt 59
|||||||||||||||||||||||
Sbjct: 45 gtattgcacttgtcccggcctgt 67
>RF00464;mir-92;AAPN01282049.1/2229-2308 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 3 gttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtccc 52
|||||| || ||||| ||||| || || | ||||||||||||||||||||
Sbjct: 13 gttgggctcagttgcgatgctttgcttgtctatggtattgcacttgtccc 62
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcctg 58
||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctg 70
>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
purpuratus
Length = 87
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 38 tattgcacttgtcccggcctg 58
|||||||||||||||||||||
Sbjct: 57 tattgcacttgtcccggcctg 77
>RF00464;mir-92;AAPN01314920.1/824-749 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 tggtattgcacttgtcccggcctgt 59
|||||||||||||||||| ||||||
Sbjct: 43 tggtattgcacttgtcccagcctgt 67
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcct 57
|||||||||||||||||||||
Sbjct: 51 gtattgcacttgtcccggcct 71
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
floridae (Florida lancelet)
Length = 78
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 gtattgcacttgtcccggcct 57
|||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcct 67
