miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 2 ggtggggatttgtggcattacttgtgttccatataaagtattgcacttgtcccggcctg 60
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12 ggtggggattggtggcattacttgtgttagatataaagtattgcacttgtcccggcctg 70
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 89.7 bits (45), Expect = 3e-18
Identities = 58/61 (95%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gggtggggatttgtggcattacttgtgttccatataaagtattgcacttgtcccggcctg 60
|||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgtgttccaca-aaagtattgcacttgtcccggcctg 69
Query: 61 t 61
|
Sbjct: 70 t 70
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 81.8 bits (41), Expect = 8e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 gggtggggatttgtggcattacttgtgttccatataaagtattgcacttgtcccggcctg 60
|||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttgtcccggcctg 70
Query: 61 t 61
|
Sbjct: 71 t 71
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 81.8 bits (41), Expect = 8e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 gggtggggatttgtggcattacttgtgttccatataaagtattgcacttgtcccggcctg 60
|||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcactacttgtgttatatgtaaagtattgcacttgtcccggcctg 70
Query: 61 t 61
|
Sbjct: 71 t 71
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 81.8 bits (41), Expect = 8e-16
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 2 ggtggggatttgtggcattacttgtgttccata-taaagtattgcacttgtcccggcctg 60
||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 12 ggtggggatttgtcgcattacttgtgttctatggtaaagtattgcacttgtcccggcctg 71
Query: 61 t 61
|
Sbjct: 72 t 72
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 60.0 bits (30), Expect = 3e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 gggtggggatttgtggcattacttgt-gttccatataaagtattgcacttgtcccggcct 59
|||||||||||||| ||||||||||| | | || || ||||||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgtagctgtatgtagagtattgcacttgtcccggcct 70
Query: 60 gt 61
||
Sbjct: 71 gt 72
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 58.0 bits (29), Expect = 1e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 gggtggggatttgtggcattacttgtgttccatataaagtattgcacttgtcccggcctg 60
||||||||||| | ||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 11 gggtggggattgggtgcattacttgtgtcctgtgtgaagtattgcacttgtcccggcctg 70
Query: 61 t 61
|
Sbjct: 71 t 71
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 56.0 bits (28), Expect = 5e-08
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 gggtggggatttgtggcattacttgtg--ttccatataaagtattgcacttgtcccggcc 58
|||| ||||||||| |||||||||||| |||| | | |||||||||||||||||||||
Sbjct: 11 gggttgggatttgttgcattacttgtgggttccctgaacagtattgcacttgtcccggcc 70
Query: 59 tgt 61
|||
Sbjct: 71 tgt 73
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 37 aagtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||||
Sbjct: 43 aagtattgcacttgtcccggcctgt 67
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 agtattgcacttgtcccggcctgt 61
||||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcctgt 75
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gggtggggatttgtggcattacttg 25
|||||||||||||| ||||||||||
Sbjct: 11 gggtggggatttgttgcattacttg 35
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 agtattgcacttgtcccggcctgt 61
||||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcctgt 75
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gggtggggatttgtggcattacttg 25
|||||||||||||| ||||||||||
Sbjct: 11 gggtggggatttgttgcattacttg 35
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 atataaagtattgcacttgtcccggcct 59
||||| ||||||||||||||||||||||
Sbjct: 44 atatatagtattgcacttgtcccggcct 71
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 gtattgcacttgtcccggcctgt 61
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
floridae (Florida lancelet)
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 agtattgcacttgtcccggcct 59
||||||||||||||||||||||
Sbjct: 46 agtattgcacttgtcccggcct 67
>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
purpuratus
Length = 87
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 tattgcacttgtcccggcctg 60
|||||||||||||||||||||
Sbjct: 57 tattgcacttgtcccggcctg 77
