miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27499_age-mir-93:mirbase
Length = 80
Score = 121 bits (61), Expect = 5e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>27560_lla-mir-93:mirbase
Length = 80
Score = 121 bits (61), Expect = 5e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>26991_eca-mir-93:mirbase
Length = 59
Score = 117 bits (59), Expect = 9e-28
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttcc 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttcc 59
>28288_ggo-mir-93:mirbase
Length = 80
Score = 113 bits (57), Expect = 1e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>30075_ppa-mir-93:mirbase
Length = 80
Score = 113 bits (57), Expect = 1e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>30192_ptr-mir-93:mirbase
Length = 80
Score = 113 bits (57), Expect = 1e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>30798_ppy-mir-93:mirbase
Length = 80
Score = 113 bits (57), Expect = 1e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>31822_mmu-mir-93:mirbase
Length = 88
Score = 113 bits (57), Expect = 1e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 15 caaagtgctgttcgtgcaggtagtgtaattacctgacctactgctgagctagcacttccc 74
Query: 61 g 61
|
Sbjct: 75 g 75
>27362_mdo-mir-93:mirbase
Length = 89
Score = 109 bits (55), Expect = 2e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttcc 59
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 16 caaagtgctgttcgtgcaggtagtgtgataacctgacctactgctgagctagcacttcc 74
>27607_sla-mir-93:mirbase
Length = 80
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattacccaacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>27698_mml-mir-93:mirbase
Length = 80
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattaaccgacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>28199_mne-mir-93:mirbase
Length = 80
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattaaccgacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>28408_hsa-mir-93:mirbase
Length = 80
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgattacccaacctactgctgagctagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>33181_bta-mir-93:mirbase
Length = 77
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 11 caaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagccagcacttccc 70
Query: 61 g 61
|
Sbjct: 71 g 71
>32703_rno-mir-93:mirbase
Length = 87
Score = 89.7 bits (45), Expect = 2e-19
Identities = 58/61 (95%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 15 caaagtgctgttcgtgcaggtagtgc-attgcctgacctactgctgagctagcacttccc 73
Query: 61 g 61
|
Sbjct: 74 g 74
>25750_xtr-mir-93a:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 caaagtgctgttcgtgcaggtag 23
|||||||||||||||||||||||
Sbjct: 9 caaagtgctgttcgtgcaggtag 31
>34259_dre-mir-93:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 aaagtgctgttcgtgcaggtagtgtg 27
||||||||||| ||||||||||||||
Sbjct: 11 aaagtgctgtttgtgcaggtagtgtg 36
>25751_xtr-mir-93b:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagtgctgttcgtgcaggtag 23
|||||||||||||||||||||
Sbjct: 5 aagtgctgttcgtgcaggtag 25
