miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32704_rno-mir-96:mirbase
Length = 106
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 ctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 70
Query: 61 atgtgcagtgccaatatgggaaaagcggg 89
|||||||||||||||||||||||||||||
Sbjct: 71 atgtgcagtgccaatatgggaaaagcggg 99
>33183_bta-mir-96:mirbase
Length = 103
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 ctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ctgcttggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 70
Query: 61 atgtgcagtgccaatatgggaaaagc 86
||||||||||||||||||||||||||
Sbjct: 71 atgtgcagtgccaatatgggaaaagc 96
>31823_mmu-mir-96:mirbase
Length = 106
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 ctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11 ctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctgtgagcaatc 70
Query: 61 atgtgcagtgccaatatgggaaaagcggg 89
||||| |||||||||||||||||||||||
Sbjct: 71 atgtgtagtgccaatatgggaaaagcggg 99
>26993_eca-mir-96:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>27700_mml-mir-96:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>28200_mne-mir-96:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>28290_ggo-mir-96:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>28410_hsa-mir-96:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>30077_ppa-mir-96:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>30194_ptr-mir-96:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>30800_ppy-mir-96:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>27609_sla-mir-96:mirbase
Length = 76
Score = 133 bits (67), Expect = 2e-32
Identities = 76/78 (97%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgt--ctctccgctctgagcaatcatgtg 58
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 59 cagtgccaatatgggaaa 76
>27363_mdo-mir-96:mirbase
Length = 97
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 ctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 60
|||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 6 ctgcttggcccgttttggcactagcacatttttgcttctgtctctctgctctgagcaatc 65
Query: 61 atgtgcagtgccaatatgggaaaagc 86
||||| ||||||||||||||||||||
Sbjct: 66 atgtgtagtgccaatatgggaaaagc 91
>31468_oan-mir-96:mirbase
Length = 109
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 ctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 60
|||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 11 ctgcttggcctcttttggcactagcacatttttgcttttgtctctctgctctgagcaatc 70
Query: 61 atgtgcagtgccaatatgggaaaagc 86
||||| ||||||||||||||||||||
Sbjct: 71 atgtgtagtgccaatatgggaaaagc 96
>34578_fru-mir-96:mirbase
Length = 102
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 12 attttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtgcagtgc 71
|||||||||||||||||||||||||| ||| | | || |||||||| ||||| |||||
Sbjct: 14 attttggcactagcacatttttgcttctgtatgtatactttgagcaattatgtgtagtgc 73
Query: 72 caatat 77
||||||
Sbjct: 74 caatat 79
>34725_tni-mir-96:mirbase
Length = 78
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 12 attttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtgcagtgc 71
|||||||||||||||||||||||||| ||| | | || |||||||| ||||| |||||
Sbjct: 7 attttggcactagcacatttttgcttctgtatatatactttgagcaattatgtgtagtgc 66
Query: 72 caatat 77
||||||
Sbjct: 67 caatat 72
>34260_dre-mir-96:mirbase
Length = 125
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 ttttggcactagcacatttttgctt 37
|||||||||||||||||||||||||
Sbjct: 23 ttttggcactagcacatttttgctt 47
>25752_xtr-mir-96:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tttggcactagcacatttttgctt 37
||||||||||||||||||||||||
Sbjct: 8 tttggcactagcacatttttgctt 31
>24671_bfl-mir-96:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tttggcactagcacatttttgct 36
|||||||||||||||||||||||
Sbjct: 21 tttggcactagcacatttttgct 43
>34969_isc-mir-96:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttttggcactagcacatttttg 34
||||||||||||||||||||||
Sbjct: 20 ttttggcactagcacatttttg 41
>34876_sko-mir-96:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 ttttggcactagcacatttt 32
||||||||||||||||||||
Sbjct: 4 ttttggcactagcacatttt 23
