miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00669;mir-96;ABRQ01279950.1/675-752 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 66 cagtgccaatatgggaaa 83
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>RF00669;mir-96;CAAB01000329.1/61906-61829 31033:Takifugu rubripes
Length = 78
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 12 attttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtgcagtgc 71
|||||||||||||||||||||||||| ||| | | || |||||||| ||||| |||||
Sbjct: 7 attttggcactagcacatttttgcttctgtatgtatactttgagcaattatgtgtagtgc 66
Query: 72 caatat 77
||||||
Sbjct: 67 caatat 72
>RF00669;mir-96;BAAF04047675.1/12047-12125 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 60.0 bits (30), Expect = 5e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 ttttggcactagcacatttttgcttgtgtctc-tccgctctgagcaatcatgtgcagtgc 71
||||||||||||||||||||||||| | | || | | |||||||||||||||| ||||
Sbjct: 8 ttttggcactagcacatttttgcttttctttcttgctgtctgagcaatcatgtgtggtgc 67
Query: 72 caatatggga 81
||||||||||
Sbjct: 68 caatatggga 77
>RF00669;mir-96;CAAB01003233.1/13798-13721 31033:Takifugu rubripes
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 12 attttggcactagcacatttttgctt-gtgtctctccgctctgagcaatcatgtgcagtg 70
||||||||||||||||||||||| || || || || | | |||||||||||||| ||||
Sbjct: 7 attttggcactagcacatttttgtttcgtttc-ctgctgtttgagcaatcatgtgtagtg 65
Query: 71 ccaatatggga 81
|||||||||||
Sbjct: 66 ccaatatggga 76
>RF00669;mir-96;AAVX01227232.1/474-397 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 attttggcactagcacatttttgctt 37
||||||||||||||||||||||||||
Sbjct: 7 attttggcactagcacatttttgctt 32
>RF00669;mir-96;AL590150.2/106766-106689 7955:Danio rerio
(zebrafish)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 ttttggcactagcacatttttgctt 37
|||||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttgctt 32
>RF00669;mir-96;AANH01001637.1/239663-239741 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 ttttggcactagcacatttttgctt 37
|||||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttgctt 32
>RF00669;mir-96;CAAE01014715.1/320294-320219 99883:Tetraodon
nigroviridis
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 attttggcactagcacatttttg 34
|||||||||||||||||||||||
Sbjct: 7 attttggcactagcacatttttg 29
>RF00669;mir-96;ABEP02026797.1/7829-7902 7739:Branchiostoma
floridae (Florida lancelet)
Length = 74
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tttggcactagcacatttttgct 36
|||||||||||||||||||||||
Sbjct: 9 tttggcactagcacatttttgct 31
>RF00669;mir-96;ABJB010787234.1/6730-6807 6945:Ixodes scapularis
(black-legged tick)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttttggcactagcacatttttg 34
||||||||||||||||||||||
Sbjct: 9 ttttggcactagcacatttttg 30
