miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataact 66
Query: 61 atacaacttactactttccc 80
||||||| ||||||||||||
Sbjct: 67 atacaacctactactttccc 86
>RF00027;let-7;ABVD01531403.1/405-317 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 89
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataact 60
|||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct: 7 tgaggtagtaagttgtattgttatgggatagggattttaggccccaattggaagataacc 66
Query: 61 atacaacttactactttccc 80
||||||||||||||||||||
Sbjct: 67 atacaacttactactttccc 86
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataact 60
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaagttgtattgttgctgggtagagattttaggccccaattagaagataact 66
Query: 61 atacaacttactactttccc 80
||||||| ||||||||||||
Sbjct: 67 atacaacctactactttccc 86
>RF00027;let-7;AAPE01289140.1/8994-8905 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 117 bits (59), Expect = 2e-26
Identities = 78/82 (95%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 tgaggtagtaagttgtattgttgtg--gggtagggattttaggccccaattagaagataa 58
||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 7 tgaggtagtaagttgtattgttgtgtggggtagggatttaaggccccaat-agaagataa 65
Query: 59 ctatacaacttactactttccc 80
||||||||||||||||||||||
Sbjct: 66 ctatacaacttactactttccc 87
>RF00027;let-7;AAWZ01028874.1/2915-3002 28377:Anolis carolinensis
(green anole)
Length = 88
Score = 103 bits (52), Expect = 3e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataact 60
||||||||||||||||||||||||||||||||||||| | ||| ||| || ||||||||
Sbjct: 7 tgaggtagtaagttgtattgttgtggggtagggatttgtgccccaaatcag-agataact 65
Query: 61 atacaacttactactttccc 80
||||||||||||||||||||
Sbjct: 66 atacaacttactactttccc 85
>RF00027;let-7;AAPN01318002.1/36628-36717 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 93.7 bits (47), Expect = 3e-19
Identities = 75/82 (91%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 tgaggtagtaagttgtattgttgtggggtagggatt--ttaggccccaattagaagataa 58
|||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 7 tgaggtagtaagttgtattgttgtggggtagggatttcttttgccccaattag-cgataa 65
Query: 59 ctatacaacttactactttccc 80
|||||||| |||||||||||||
Sbjct: 66 ctatacaatttactactttccc 87
>RF00027;let-7;CAAB01003893.1/10262-10170 31033:Takifugu rubripes
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgaggtagtaagttgtattgttgtgggg 28
|||||||||||||||| |||||||||||
Sbjct: 7 tgaggtagtaagttgtgttgttgtgggg 34
