miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 123 bits (62), Expect = 3e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 tcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
Query: 61 ga 62
||
Sbjct: 69 ga 70
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 107 bits (54), Expect = 1e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 tcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 60
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9 tcggcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctat 68
Query: 61 ga 62
||
Sbjct: 69 ga 70
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 4 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 62
||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 79.8 bits (40), Expect = 3e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 7 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 62
||||||| |||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 77.8 bits (39), Expect = 1e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 4 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 62
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 75.8 bits (38), Expect = 5e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 tcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 60
|||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 9 tcggcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagggctat 68
Query: 61 ga 62
||
Sbjct: 69 ga 70
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 73.8 bits (37), Expect = 2e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 4 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 60
|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 71.9 bits (36), Expect = 8e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 7 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 62
||||||| |||||||||||| || | | ||||||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 4 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 62
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 3 ggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 60
||||||||||||||| |||||||| || | ||||||||||||||||||||||||||
Sbjct: 11 ggcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 5e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 4 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 60
|||||||||||||| |||||||| |||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 7 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 62
|||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 15 tctttacagtgctgccttgtctgatcaggttcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 61.9 bits (31), Expect = 8e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 16 tgctgccttgttgcatatggatcaagcagcattgtacagggctatga 62
||||||||||| || | | ||||||||||||||||||||||||||||
Sbjct: 24 tgctgccttgtggcgtcttgatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 5e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 3 ggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggct 58
||||||| ||||||| |||||||| || | ||||||||||||||||||||||||
Sbjct: 11 ggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 36 atcaagcagcattgtacagggctatga 62
|||||||||||||||||||||||||||
Sbjct: 44 atcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 37 tcaagcagcattgtacagggctatga 62
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
