miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00670;mir-105;ABRO01195452.1/9888-9808 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 129 bits (65), Expect = 6e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
Query: 61 gagcatgtgctacggtgtcta 81
|||||| ||| | ||||||||
Sbjct: 61 gagcatatgccatggtgtcta 81
>RF00670;mir-105;AAEX02003804.1/918-997 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
|||||||| | ||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct: 1 tgtgcatcatggtcaaatgctcagactcct-tggtggctgcttatgcaccatgaatgttt 59
Query: 61 gagcatgtgctacggtgtcta 81
|||||||||||| ||||||||
Sbjct: 60 gagcatgtgctatggtgtcta 80
>RF00670;mir-105;AABR04012381.1/35187-35107 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 9 gtagtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttgagcatgt 68
|||||||| |||||||| |||||||||||||| ||| | |||||||||||||||||||
Sbjct: 9 gtagtcaagtgctcagatgtctgtggtggctgcttatgtatcacggatgtttgagcatgt 68
Query: 69 gctacggtgtcta 81
|||| ||| ||||
Sbjct: 69 gctatggtatcta 81
>RF00670;mir-105;AAIY01029761.1/2576-2497 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
||||||| || ||||||||||||||||||||| ||||||| | ||||||| |||| |||
Sbjct: 1 tgtgcattgtggtcaaatgctcagactcctgttgtggctgtttgtgcaccatggat-ttt 59
Query: 61 gagcatgtgctacggtgtcta 81
|||||||||||| || |||||
Sbjct: 60 gagcatgtgctatggcgtcta 80
>RF00670;mir-105;CAAA01059274.1/4642-4722 10090:Mus musculus
(house mouse)
Length = 81
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
||||||| ||| ||| |||||||| | ||||||||||||| |||||||||| ||| ||
Sbjct: 1 tgtgcattttagccaagtgctcagatgcttgtggtggctgcttatgcaccacgaatgctt 60
Query: 61 gagcatgtgcta 72
||||||||||||
Sbjct: 61 gagcatgtgcta 72
>RF00670;mir-105;AANN01683306.1/428-348 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 60.0 bits (30), Expect = 4e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 7 tcgtagtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttgagcat 66
||||||||||||||||||| |||||| |||||| || ||| || || | ||| |||||||
Sbjct: 7 tcgtagtcaaatgctcagattcctgtagtggcttctgatgtactacagctgtctgagcat 66
Query: 67 gtgctacggtgtct 80
|||| |||| ||||
Sbjct: 67 gtgccacggcgtct 80
>RF00670;mir-105;AAEX02003804.1/4224-4304 9615:Canis lupus
familiaris (dog)
Length = 81
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 29 ctgtggtggctgctcatgcaccacggatgtttga 62
|||||||||||||||||||||| |||||||||||
Sbjct: 29 ctgtggtggctgctcatgcacctcggatgtttga 62
>RF00670;mir-105;AAWR02040596.1/7734-7654 9796:Equus caballus
(horse)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 12 gtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttga 62
|||||||| || |||| ||||| ||||||||||||||| | ||||||||||
Sbjct: 12 gtcaaatgttctgactgctgtgctggctgctcatgcactatggatgtttga 62
>RF00670;mir-105;AANN01683306.1/2545-2466 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 12 gtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttgagcat 66
||||||||||||| |||| ||||| | || | |||||||||||||||||||||||
Sbjct: 12 gtcaaatgctcaggctcc-gtggtagttgattatgcaccacggatgtttgagcat 65
>RF00670;mir-105;AANG01759982.1/244-164 9685:Felis catus (domestic
cat)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 9 gtagtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttga 62
||||||||||| || | || ||||||||||||| |||||||| ||||||||||
Sbjct: 9 gtagtcaaatgatctgcctagtgtggtggctgcttatgcaccatggatgtttga 62
>RF00670;mir-105;AAWR02040596.1/6201-6119 9796:Equus caballus
(horse)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtagtcaaatgctcagactcc 29
|||||||| ||||||||||||||||||||
Sbjct: 1 tgtgcatcatagtcaaatgctcagactcc 29
>RF00670;mir-105;ABRO01195452.1/8720-8641 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 29 ctgtggtggctgctcatgcaccacggatgtttgagcatg 67
|||||||||||||| |||||||| |||||| ||| ||||
Sbjct: 28 ctgtggtggctgcttatgcaccatggatgtgtgaccatg 66
>RF00670;mir-105;ABRT010308690.1/936-856 9478:Tarsius syrichta
(Philippine tarsier)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 24 gactcctgtggtggctgctcatgcaccacggatgtttg 61
|||| |||||||||||||| |||||||| | |||||||
Sbjct: 25 gactactgtggtggctgcttatgcaccatgaatgtttg 62
>RF00670;mir-105;ABRQ01630446.1/1144-1065 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 13 tcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttgagcat 66
|||| |||||||||| |||| || |||||| ||||| || |||||||||||||
Sbjct: 13 tcaattgctcagacttctgtagtagctgctgatgcatcatagatgtttgagcat 66
