miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00670;mir-105;AAEX02003804.1/918-997 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 tgtgcatcatggtcaaatgctcagactccttggtggctgcttatgcaccatgaatgtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgcatcatggtcaaatgctcagactccttggtggctgcttatgcaccatgaatgtttg 60
Query: 61 agcatgtgctatggtgtcta 80
||||||||||||||||||||
Sbjct: 61 agcatgtgctatggtgtcta 80
>RF00670;mir-105;ABRO01195452.1/9888-9808 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcatggtcaaatgctcagactcct-tggtggctgcttatgcaccatgaatgttt 59
|||||||| ||||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
Query: 60 gagcatgtgctatggtgtcta 80
|||||| ||| ||||||||||
Sbjct: 61 gagcatatgccatggtgtcta 81
>RF00670;mir-105;CAAA01059274.1/4642-4722 10090:Mus musculus
(house mouse)
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatgaatgtttgagcatgtgctatggt 75
|||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 32 tggtggctgcttatgcaccacgaatgcttgagcatgtgctatggt 76
>RF00670;mir-105;AAIY01029761.1/2576-2497 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 tgtgcatcatggtcaaatgctcagactcct-tggtggctgcttatgcaccatgaatgttt 59
||||||| ||||||||||||||||||||| | ||||||| || ||||||||| || |||
Sbjct: 1 tgtgcattgtggtcaaatgctcagactcctgttgtggctgtttgtgcaccatggat-ttt 59
Query: 60 gagcatgtgctatggtgtcta 80
||||||||||||||| |||||
Sbjct: 60 gagcatgtgctatggcgtcta 80
>RF00670;mir-105;AANN01683306.1/2545-2466 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 10 tggtcaaatgctcagactccttggtggctgcttatgcaccatgaatgtttgagcatgtgc 69
||||||||||||||| |||| |||| | || |||||||||| | |||||||||||| | |
Sbjct: 10 tggtcaaatgctcaggctccgtggtagttgattatgcaccacggatgtttgagcatttac 69
Query: 70 tatggtgtcta 80
||||||||||
Sbjct: 70 aatggtgtcta 80
>RF00670;mir-105;ABRT010308690.1/936-856 9478:Tarsius syrichta
(Philippine tarsier)
Length = 81
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatgaatgtttg 60
||||||||||||||||||||||||||||||
Sbjct: 33 tggtggctgcttatgcaccatgaatgtttg 62
>RF00670;mir-105;AABR04012381.1/35187-35107 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 60.0 bits (30), Expect = 4e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatgaatgtttgagcatgtgctatggtgtcta 80
||||||||||||||| | || | |||||||||||||||||||||| ||||
Sbjct: 32 tggtggctgcttatgtatcacggatgtttgagcatgtgctatggtatcta 81
>RF00670;mir-105;AANG01759982.1/244-164 9685:Felis catus (domestic
cat)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatgaatgtttga 61
|||||||||||||||||||||| ||||||||
Sbjct: 32 tggtggctgcttatgcaccatggatgtttga 62
>RF00670;mir-105;AAWR02040596.1/6201-6119 9796:Equus caballus
(horse)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgtgcatcatggtcaaatgctcagactcc 29
|||||||||| ||||||||||||||||||
Sbjct: 1 tgtgcatcatagtcaaatgctcagactcc 29
>RF00670;mir-105;AALT01106831.1/106-184 42254:Sorex araneus
(European shrew)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 40 cttatgcaccatgaatgtttgagcatgtgctatggtgtcta 80
|||||||||| || ||| ||||||||||||||| |||||||
Sbjct: 39 cttatgcaccgtggatgcttgagcatgtgctattgtgtcta 79
>RF00670;mir-105;ABRO01195452.1/8720-8641 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatgaatgtttgagcatg 66
|||||||||||||||||||||| |||| ||| ||||
Sbjct: 31 tggtggctgcttatgcaccatggatgtgtgaccatg 66
