miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;AAGU02576112.1/3465-3375 9785:Loxodonta africana
(African savanna elephant)
Length = 91
Score = 143 bits (72), Expect = 4e-34
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 2 ctctgctgtggcctatggcttttcattcctatgtgattgctgtttctaattcatgtaggg 61
|||||||| ||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct: 4 ctctgctgcggcctatggcttttcattcctatgtgattgctgttcccaactcatgtaggg 63
Query: 62 ctaaaagccatgggctacagtgaggggc 89
||||||||||||||||||||||||||||
Sbjct: 64 ctaaaagccatgggctacagtgaggggc 91
>RF00246;mir-135;AAPE01018078.1/3690-3601 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 129 bits (65), Expect = 6e-30
Identities = 84/89 (94%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 gctctgctgtggcctatggcttttcattcctatgtgattgctgtttctaattcatgtagg 60
||||||||||||||||||||||||||||||||||||||||| | || || |||||||||
Sbjct: 3 gctctgctgtggcctatggcttttcattcctatgtgattgccg-ttggaactcatgtagg 61
Query: 61 gctaaaagccatgggctacagtgaggggc 89
|||||||||||||||||||||||||||||
Sbjct: 62 gctaaaagccatgggctacagtgaggggc 90
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 117 bits (59), Expect = 2e-26
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 2 ctctgctgtggcctatggcttttcattcctatgtgattgctgtttctaattcatgtaggg 61
||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||
Sbjct: 4 ctctgctgtggcctatggctttttattcctatgtgattgctgctttgaactcatgtaggg 63
Query: 62 ctaaaagccatgggctacagtgagggg 88
|| ||||||||||||||||| ||||||
Sbjct: 64 ctgaaagccatgggctacagagagggg 90
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2 ctctgctgtggcctatggcttttcattcctatgtgattgctgtttctaattcatgtaggg 61
||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||
Sbjct: 4 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 63
Query: 62 ctaaaagccatgggctac 79
| ||||||||||||||||
Sbjct: 64 cgaaaagccatgggctac 81
>RF00246;mir-135;AAIY01659495.1/471-383 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 ctatggcttttcattcctatgtgatt 39
||||||||||||||||||||||||||
Sbjct: 16 ctatggcttttcattcctatgtgatt 41
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 ctatggcttttcattcctatgtgatt 39
||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 ctatggcttttcattcctatgtgatt 39
||||||||||| ||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 tatggcttttcattcctatgtgattg 40
|||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgattg 42
