miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00694;mir-137;AADN02012896.1/32588-32489 9031:Gallus gallus
(chicken)
Length = 100
Score = 109 bits (55), Expect = 3e-24
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 78
>RF00694;mir-137;BAAE01237923.1/971-872 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 101 bits (51), Expect = 8e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24 gggtattcttgggtggataatacggatcacgttgttattgcttaagaatacgcgt 78
>RF00694;mir-137;ABRO01064648.1/7203-7302 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 95.6 bits (48), Expect = 5e-20
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacg 52
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24 gggtattcttgggtggataatacggattacgttgttatagcttaagaatacg 75
>RF00694;mir-137;AL929343.7/129004-128905 7955:Danio rerio
(zebrafish)
Length = 100
Score = 85.7 bits (43), Expect = 5e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 24 gggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgt 78
>RF00694;mir-137;CAAK05033301.1/18518-18419 7955:Danio rerio
(zebrafish)
Length = 100
Score = 85.7 bits (43), Expect = 5e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 24 gggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgt 78
>RF00694;mir-137;AJ324266.1/117-18 9606:Homo sapiens (human)
Length = 100
Score = 71.9 bits (36), Expect = 7e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacg 52
||||||||||||||||||||| ||||| |||||||||| | |||||||||||
Sbjct: 24 gggtattcttgggtggataatccggatgacgttgttatggtttaagaatacg 75
>RF00694;mir-137;AAPN01296459.1/4449-4348 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 61.9 bits (31), Expect = 7e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
|||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 24 gggtattcttgggtacataatacggatggcgctgttattgcttgagaatacgcgt 78
>RF00694;mir-137;AAWZ01010620.1/48359-48459 28377:Anolis
carolinensis (green anole)
Length = 101
Score = 61.9 bits (31), Expect = 7e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
|||||||||||||| ||||||| ||| |||||||||||||| |||||||||||
Sbjct: 24 gggtattcttgggtatataatacagatggcgttgttattgcttgagaatacgcgt 78
>RF00694;mir-137;BAAF04063265.1/5995-5897 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 61.9 bits (31), Expect = 7e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
|||||||||||||| |||||||| ||| || ||||||||||| |||||||||||
Sbjct: 24 gggtattcttgggttgataatacagatgtcgatgttattgcttgagaatacgcgt 78
>RF00694;mir-137;ABVD01008873.1/1869-1971 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 103
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tattcttgggtggataatacggattac 30
|||||||||||||||||||||||||||
Sbjct: 27 tattcttgggtggataatacggattac 53
>RF00694;mir-137;CAAE01013623.1/560-657 99883:Tetraodon
nigroviridis
Length = 98
Score = 54.0 bits (27), Expect = 2e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
|||||||||||||| |||||||| ||| | ||||||||||| |||||||||||
Sbjct: 24 gggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgt 78
>RF00694;mir-137;ABPK01025702.1/584-484 57307:Labeotropheus
fuelleborni
Length = 101
Score = 54.0 bits (27), Expect = 2e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
|||||||||||||| |||||||| ||| | ||||||||||| |||||||||||
Sbjct: 25 gggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgt 79
>RF00694;mir-137;BAAF04031315.1/5933-5836 8090:Oryzias latipes
(Japanese medaka)
Length = 98
Score = 54.0 bits (27), Expect = 2e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgt 55
|||||||||||||| |||||||| ||| | ||||||||||| |||||||||||
Sbjct: 24 gggtattcttgggttgataatacagatatggatgttattgcttgagaatacgcgt 78
>RF00694;mir-137;AAFR03049204.1/9121-9021 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 101
Score = 46.1 bits (23), Expect = 4e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 1 gggtattcttgggtggataatacggattacgttgttattgcttaagaatac 51
|||||||||||||| |||||||| || || ||||||||||| |||||||
Sbjct: 24 gggtattcttgggtagataataccaatggcgctgttattgcttgagaatac 74
