miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00671;mir-138;AC124778.4/108490-108415 10090:Mus musculus
(house mouse)
Length = 76
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 68
>RF00671;mir-138;AAKN02012252.1/96136-96211 10141:Cavia porcellus
(domestic guinea pig)
Length = 76
Score = 115 bits (58), Expect = 6e-26
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgttgcccatcagagaacggctacttcacaacaccaggg 68
Query: 61 tc 62
||
Sbjct: 69 tc 70
>RF00671;mir-138;AAWZ01011543.1/110956-110881 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 105 bits (53), Expect = 6e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgttgccaaagagagaacggctacttcacaacaccaggg 68
Query: 61 t 61
|
Sbjct: 69 t 69
>RF00671;mir-138;AAFR03015360.1/50251-50176 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 99.6 bits (50), Expect = 4e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgtcgccagtctgagaacggctacttcacaacaccaggg 68
Query: 61 tc 62
||
Sbjct: 69 tc 70
>RF00671;mir-138;ABGA01071061.1/4521-4596 9601:Pongo abelii
(Sumatran orangutan)
Length = 76
Score = 89.7 bits (45), Expect = 3e-18
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttca 49
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgttgccaatcaaagaacggctacttca 57
>RF00671;mir-138;AADN02001197.1/36532-36457 9031:Gallus gallus
(chicken)
Length = 76
Score = 89.7 bits (45), Expect = 3e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
|||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccaggg 68
Query: 61 t 61
|
Sbjct: 69 t 69
>RF00671;mir-138;AAGV020455273.1/411-336 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 79.8 bits (40), Expect = 3e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccggcgcccatcggaaaacggctacttcacaacaccaggg 68
>RF00671;mir-138;AANH01002440.1/5358-5433 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccgttgccaatcaga-gaacggctacttcacaacaccagg 59
||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg-ccacaatcaaaggaacggctacttcccaacaccagg 67
Query: 60 gtc 62
|||
Sbjct: 68 gtc 70
>RF00671;mir-138;ABQO010575943.1/598-680 9315:Macropus eugenii
(tammar wallaby)
Length = 83
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAPY01619641.1/874-793 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;ABRO01071929.1/3084-3003 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 82
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;ABRQ01008257.1/506-426 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AADN02051568.1/806-888 9031:Gallus gallus
(chicken)
Length = 83
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;BX908772.11/124956-125038 7955:Danio rerio
(zebrafish)
Length = 83
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;CAAK05039157.1/16818-16742 7955:Danio rerio
(zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 acggctacttcacaacaccagggtc 62
|||||| ||||||||||||||||||
Sbjct: 47 acggcttcttcacaacaccagggtc 71
>RF00671;mir-138;CAAE01014577.1/2727918-2727843 99883:Tetraodon
nigroviridis
Length = 76
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AANH01000937.1/11718-11794 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;BAAE01294625.1/198-123 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;BAAF04008633.1/8370-8452 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAVX01140452.1/499-418 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAVX01130926.1/1014-940 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcaggccg 23
|||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccg 31
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 cggctacttcacaacaccagggt 61
|||||||||||||||||||||||
Sbjct: 46 cggctacttcacaacaccagggt 68
>RF00671;mir-138;AAGU02478942.1/4-74 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 33 agagaacggctacttcacaacaccagggtc 62
|||||||||||||||||| |||||||||||
Sbjct: 37 agagaacggctacttcac-acaccagggtc 65
