miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00671;mir-138;ABRO01071929.1/3084-3003 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 82
Score = 113 bits (57), Expect = 3e-25
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcatgccgacgagcagcgcatcctcttacccggctatttcacgac 60
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgac-agcagcgcatcctcttacccggctatttcacgac 67
Query: 61 accagggtt 69
|||||||||
Sbjct: 68 accagggtt 76
>RF00671;mir-138;ABRQ01008257.1/506-426 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 107 bits (54), Expect = 2e-23
Identities = 66/69 (95%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcatgccgacgagcagcgcatcctcttacccggctatttcacgac 60
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgacgagcagcgcatcctctta--cggctatttcacgac 66
Query: 61 accagggtt 69
|||||||||
Sbjct: 67 accagggtt 75
>RF00671;mir-138;ABQO010575943.1/598-680 9315:Macropus eugenii
(tammar wallaby)
Length = 83
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcatgccgacgagcagcgcatcctcttacccggctatttcacgac 60
|||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||| ||
Sbjct: 9 agctggtgttgtgaatcaggccgacaagcagctcatcctattacccggctatttcaccac 68
Query: 61 accagggtt 69
|||||||||
Sbjct: 69 accagggtt 77
>RF00671;mir-138;AAPY01619641.1/874-793 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 91.7 bits (46), Expect = 1e-18
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcatgccgacgagcagcgcatcctcttacccggctatttcacgac 60
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 9 agctggtgttgtgaatcaggccgacgagcagcgcat-ctcttacccggcgatttcacgac 67
Query: 61 ac 62
||
Sbjct: 68 ac 69
>RF00671;mir-138;AADN02051568.1/806-888 9031:Gallus gallus
(chicken)
Length = 83
Score = 65.9 bits (33), Expect = 6e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 1 agctggtgttgtgaatcatgccgacgagcagcgcatcctcttacccggctatttcacgac 60
|||||||||||||||||| ||||||| ||||| |||| || ||||||||||||| ||
Sbjct: 9 agctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctatttcactac 68
Query: 61 accagggtt 69
|||||||||
Sbjct: 69 accagggtt 77
>RF00671;mir-138;BX908772.11/124956-125038 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 acccggctatttcacgacaccagggt 68
||||||||||||||| ||||||||||
Sbjct: 51 acccggctatttcacaacaccagggt 76
