miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAHX01032846.1/18098-18178 10116:Rattus norvegicus
(Norway rat)
Length = 81
Score = 105 bits (53), Expect = 9e-23
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 6 ctctgggtccatcttccagtacagtgttggatggtctagtcacgaagctcctaacactgt 65
||||| |||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct: 1 ctctgagtccatcttccagtgcagtgttggatggttgaagtacgaagctcctaacactgt 60
Query: 66 ctggtaaagatggcccccggg 86
|||||||||||||||||||||
Sbjct: 61 ctggtaaagatggcccccggg 81
>RF00241;mir-8;ABRQ01038381.1/1702-1622 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 105 bits (53), Expect = 9e-23
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 6 ctctgggtccatcttccagtacagtgttggatggtctagtcacgaagctcctaacactgt 65
||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct: 1 ctctgggcccatcttccagcacagtgttggatggtctaattgtgaagctcctaacactgt 60
Query: 66 ctggtaaagatggcccccggg 86
|||||||||||||||| ||||
Sbjct: 61 ctggtaaagatggccctcggg 81
>RF00241;mir-8;AAFR03037717.1/783-855 13616:Monodelphis domestica
(gray short-tailed opossum)
Length = 73
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/81 (83%), Gaps = 8/81 (9%)
Strand = Plus / Plus
Query: 6 ctctgggtccatcttccagtacagtgttggatggtctagtcacgaagctcctaacactgt 65
||||||| |||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct: 1 ctctggggccatcttccagtacagtggtggatggt--------gaagcttctaacactgt 52
Query: 66 ctggtaaagatggcccccggg 86
|||||||||||| || |||||
Sbjct: 53 ctggtaaagatgccctccggg 73
