miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 2 ggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtactag 60
|||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtactag 73
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 75.8 bits (38), Expect = 5e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtact 58
||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 14 aggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 73.8 bits (37), Expect = 2e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 2 ggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtact 58
|||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 aggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtact 58
||||||||||| ||||||||||||| || | ||| ||||||||||||||||||||||
Sbjct: 14 aggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 65.9 bits (33), Expect = 5e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 2 ggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtact 58
|||||||||||||||||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 56.0 bits (28), Expect = 5e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 aggatatcatcatatactgtaagtttgcgaca-agatactacagtatagatgatgtacta 59
||||||||||| |||||||||||||| | | ||| |||||||||||||||||||||||
Sbjct: 14 aggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgtacta 73
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 actacagtatagatgatgtacta 59
|||||||||||||||||||||||
Sbjct: 51 actacagtatagatgatgtacta 73
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aggatatcatcatatactgtaagtt 25
||||||||||| |||||||||||||
Sbjct: 14 aggatatcatcgtatactgtaagtt 38
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 actacagtatagatgatgtacta 59
|||||||||||||||||||||||
Sbjct: 51 actacagtatagatgatgtacta 73
