miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;AAKN02022618.1/8712-8798 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 99.6 bits (50), Expect = 3e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccatgggttgtgtcagtgtcagacctgtgaagttcagttcttcag 58
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 16 tgagaactgaattccatgggttgtgtcagcgtcagacctgtgaaattcagttcttcag 73
>RF00691;mir-146;ABRQ01081253.1/1221-1135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 91.7 bits (46), Expect = 8e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccatgggttgtgtcagtgtcagacctgtgaagttcagttcttcag 58
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 16 tgagaactgaattccatgggtcgtctcagtgtcagacctgtggagttcagttcttcag 73
>RF00691;mir-146;CAAA01220328.1/4488-4574 10090:Mus musculus
(house mouse)
Length = 87
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccatgggttgtgtcagtgtcagacctgtgaagttcagttcttcag 58
|||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||||
Sbjct: 16 tgagaactgaattccatgggttatatcaatgtcagacctgtgaaattcagttcttcag 73
>RF00691;mir-146;AAFR03012754.1/25474-25388 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccatgggttgtgtcagtgtcagacctgtgaagttcagttcttcag 58
|||||||||||||||||||||||| | || |||||||| |||| ||||||||||||
Sbjct: 16 tgagaactgaattccatgggttgtctttgtatcagacctatgaaactcagttcttcag 73
>RF00691;mir-146;ABQF01019538.1/14288-14195 59729:Taeniopygia
guttata
Length = 94
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccatgggttgt 24
||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccatgggttgt 39
>RF00691;mir-146;AADN02035864.1/43695-43788 9031:Gallus gallus
(chicken)
Length = 94
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccatgggttgt 24
||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccatgggttgt 39
>RF00691;mir-146;AAPN01152393.1/27352-27260 9258:Ornithorhynchus
anatinus (platypus)
Length = 93
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccatgggttgtg 25
|||||||||||||||| ||||||||
Sbjct: 16 tgagaactgaattccacgggttgtg 40
