miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;AAEX02015545.1/16918-16829 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 121 bits (61), Expect = 1e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 75
Query: 61 g 61
|
Sbjct: 76 g 76
>RF00691;mir-146;AANG01052378.1/2905-2994 9685:Felis catus
(domestic cat)
Length = 90
Score = 81.8 bits (41), Expect = 8e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
|||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggctgtaagctcaagcaaatggcctagggactcagttctggt 75
Query: 61 g 61
|
Sbjct: 76 g 76
>RF00691;mir-146;ABRQ01378994.1/1874-1963 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 73.8 bits (37), Expect = 2e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct: 16 tgagaactgaattccataggctgtgagctctagcaaatgccctaggaactcagttctggt 75
Query: 61 g 61
|
Sbjct: 76 g 76
>RF00691;mir-146;ABDC01238493.1/6154-6243 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 65.9 bits (33), Expect = 5e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggctgtgagctctagtgaatgccctagggactcagttctggt 75
Query: 61 g 61
|
Sbjct: 76 g 76
>RF00691;mir-146;AAYZ01153033.1/3261-3350 9978:Ochotona princeps
(American pika)
Length = 90
Score = 65.9 bits (33), Expect = 5e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
|||||||||||||| |||||| ||||||| |||| | | ||||||||||||||||||||
Sbjct: 16 tgagaactgaattctataggccgtgagctctagcagataccctagggactcagttctggt 75
Query: 61 g 61
|
Sbjct: 76 g 76
>RF00691;mir-146;AAIY01333564.1/1864-1775 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 90
Score = 65.9 bits (33), Expect = 5e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct: 16 tgagaactgaattccataggctgtgagctctagcaaatgccctaggagctcagttctggt 75
Query: 61 g 61
|
Sbjct: 76 g 76
>RF00691;mir-146;AAFR03025019.1/59830-59741 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagct 29
|||||||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggctgtgagct 44
>RF00691;mir-146;ABBA01063157.1/877-789 9606:Homo sapiens (human)
Length = 89
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagct 29
|||||||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggctgtgagct 44
>RF00691;mir-146;AAGU02025916.1/485-574 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 58.0 bits (29), Expect = 1e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
|||||||||||||||||||||||||| || |||| | |||||| |||||||||||||
Sbjct: 16 tgagaactgaattccataggctgtgaactctagcagatgccctaggaactcagttctggt 75
Query: 61 g 61
|
Sbjct: 76 g 76
>RF00691;mir-146;ABRO01069912.1/224-312 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 56.0 bits (28), Expect = 5e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaa 36
||||||||||||||||||||| |||||||| |||||
Sbjct: 16 tgagaactgaattccataggccgtgagctttagcaa 51
>RF00691;mir-146;AAPN01141106.1/3079-3169 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgag 27
|||||||||||||||||||||||||||
Sbjct: 17 tgagaactgaattccataggctgtgag 43
>RF00691;mir-146;AAKN02016522.1/10507-10417 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 50.1 bits (25), Expect = 3e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 3 agaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctgg 59
|||||||||||| ||||||||||||| |||||| | |||||||||||||||||
Sbjct: 18 agaactgaattctgtaggctgtgagctccagcaaatgccttagggactcagttctgg 74
>RF00691;mir-146;ABRQ01105150.1/1426-1514 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 50.1 bits (25), Expect = 3e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcagttctggt 60
|||||||||||| |||||||| |||||| |||| | | |||||| |||||||||||||
Sbjct: 15 tgagaactgaatgccataggcagtgagcgctagcagataccctaggaactcagttctggt 74
Query: 61 g 61
|
Sbjct: 75 g 75
>RF00691;mir-146;AAWZ01011696.1/200150-200239 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggct 22
||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggct 37
>RF00691;mir-146;ABQF01027036.1/15002-14913 59729:Taeniopygia
guttata
Length = 90
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggc 21
|||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggc 36
>RF00691;mir-146;AADN02030809.1/7252-7342 9031:Gallus gallus
(chicken)
Length = 91
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgagaactgaattccataggc 21
|||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggc 36
