miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 99.6 bits (50), Expect = 6e-21
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 9 aatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgctt 68
||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggata-cagtgtgcggaagtgctt 59
Query: 69 ctgctacatt 78
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 16 tggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgcttctgctac 75
|||||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct: 8 tggaaacatttctgcacaaactcgattatggataccaatgtgccaaaatgcttttgctac 67
Query: 76 att 78
|||
Sbjct: 68 att 70
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 75.8 bits (38), Expect = 8e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 9 aatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgctt 68
||||||||||||||| | ||||||||||| |||| || || ||||||||| |||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgattttg-atgccagtgtgcagaaatgctt 59
Query: 69 ctgctacatt 78
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 75.8 bits (38), Expect = 8e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 9 aatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgctt 68
||||||||||||||||| | ||||| ||| |||||||| | |||||||||||| |||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 69 ctgctacatt 78
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 71.9 bits (36), Expect = 1e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 27 ctgcacaaactagattatggataccagtgtgcggaaatgcttctgctacatt 78
||||||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct: 19 ctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
cat)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 19 aaacattgctgcacaaactagattatggataccagtgtgc 58
||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11 aaacatttctgcacaaactagattatggataccagtgtgc 50
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 9 aatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgctt 68
|||||||||||| || | ||||||||||| || || || | ||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 69 ctgctacatt 78
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABRN01165333.1/9979-9911 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 38 agattatggataccagtgtgcggaaatgcttctgcta 74
|||||||||| ||||||||| ||||||||||||||||
Sbjct: 29 agattatggaaaccagtgtgtggaaatgcttctgcta 65
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 56.0 bits (28), Expect = 7e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 15 gtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgcttctgcta 74
||||||||||| ||||||| |||| | || || |||||||||| ||| |||||||||||
Sbjct: 7 gtggaaacatttctgcacacactatactactgaaaccagtgtgcagaagtgcttctgcta 66
Query: 75 catt 78
||||
Sbjct: 67 catt 70
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 9 aatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgctt 68
||||||| ||||||| ||||| |||||||| || || |||||||||| ||| |||||
Sbjct: 1 aatctagctgaaacatctctgcataaactagactactgaaaccagtgtgcagaagtgctt 60
Query: 69 ctgctacatt 78
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAIY01580043.1/888-817 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 29 gcacaaactagattatggataccagtgtgcggaaatgcttctgctacatt 78
|||||| |||| ||||||| |||||||| ||| || ||||||||||||||
Sbjct: 23 gcacaagctaggttatggaaaccagtgttcgggaaggcttctgctacatt 72
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 aatctagtggaaacattgctgcacaaactagat 41
||||||||||||||||| ||||||| |||||||
Sbjct: 1 aatctagtggaaacatttctgcacagactagat 33
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 10 atctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgcttc 69
||||||||||||||| |||||||||||||| || | ||||||||| ||| |||||
Sbjct: 2 atctagtggaaacatctctgcacaaactagactactaaaaccagtgtgtagaagggcttc 61
Query: 70 tgctacatt 78
|||||||||
Sbjct: 62 tgctacatt 70
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 50 ccagtgtgcggaaatgcttctgctacatt 78
|||||||| ||||||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;AAGV020068496.1/506-569 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 42 tatggataccagtgtgcggaaatgcttctgct 73
|||||||| |||||||| ||||||||||||||
Sbjct: 28 tatggatatcagtgtgcagaaatgcttctgct 59
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 accagtgtgcggaaatgcttctgctaca 76
||||||||| ||||||||||||||||||
Sbjct: 40 accagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;AAKN02005203.1/37099-37168 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 aaacattgctgcacaaactagattatggataccagtgtgcggaaatgcttctgctacatt 78
||||||| |||||||||| ||| ||| || |||||||| || ||||||||||||||||
Sbjct: 11 aaacatttctgcacaaaccagactattgaatccagtgtggggcgatgcttctgctacatt 70
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 cagtgtgcggaaatgcttctgctacatt 78
||||||||||||||||||||| ||||||
Sbjct: 41 cagtgtgcggaaatgcttctggtacatt 68
>RF00693;mir-147;AAEX02006875.1/88817-88889 9615:Canis lupus
familiaris (dog)
Length = 73
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 16 tggaaacattgctgcacaaactagattatggataccagtgtgc 58
||||| |||| ||| ||||||||||||||| ||| ||||||||
Sbjct: 8 tggaagcatttctgtacaaactagattatgaatatcagtgtgc 50
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 44 tggataccagtgtgcggaaatgcttctgcta 74
|||| |||||||||||||| |||||||||||
Sbjct: 36 tggacaccagtgtgcggaagtgcttctgcta 66
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 cagtgtgcggaaatgcttctgct 73
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 cagtgtgcggaaatgcttctgct 73
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 agtgtgcggaaatgcttctgctacat 77
|||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 accagtgtgcggaaatgcttctgctacatt 78
||||||||| ||||||||||||| ||||||
Sbjct: 49 accagtgtgtggaaatgcttctgttacatt 78
>RF00693;mir-147;AAPY01498171.1/7435-7366 37347:Tupaia belangeri
(northern tree shrew)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 9 aatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgctt 68
||||||| | ||| ||| |||||||||| ||| | |||| || | |||| ||||||||||
Sbjct: 1 aatctagggaaaagatttctgcacaaaccagactttggaaactaatgtgtggaaatgctt 60
Query: 69 ctgctacatt 78
||||| ||||
Sbjct: 61 ctgctgcatt 70
