miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;AAGU02053377.1/4604-4519 9785:Loxodonta africana
(African savanna elephant)
Length = 86
Score = 111 bits (56), Expect = 9e-25
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 1 aaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaactttgt 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 15 aaagttctgagacactccgactctgagtatgatagaagtcagtgcactacagaactttgt 74
>RF00248;mir-148;AAWZ01008895.1/29849-29934 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 aaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaactttgt 60
||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 15 aaagttctgtgacactcggactctgattatgatagaagtcagtgcactacagaactttgt 74
>RF00248;mir-148;AAFR03047726.1/72700-72785 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 87.7 bits (44), Expect = 1e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 1 aaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaactttgt 60
||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct: 15 aaagttctgggacactcagactctgattaggatagaagtcagtgcactacagaactttgt 74
>RF00248;mir-148;AALT01103337.1/950-865 42254:Sorex araneus
(European shrew)
Length = 86
Score = 73.8 bits (37), Expect = 2e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 8 tgagacactccgactctgaatatgatagaagtcagtgcactacagaactttgt 60
||||||||||||||||||| || ||||| |||||||||||||||||| |||||
Sbjct: 22 tgagacactccgactctgagtaggatagcagtcagtgcactacagaattttgt 74
>RF00248;mir-148;AADN02000964.1/27361-27276 9031:Gallus gallus
(chicken)
Length = 86
Score = 71.9 bits (36), Expect = 8e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1 aaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaactttgt 60
||||||||| ||||||| ||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 15 aaagttctgtgacactcagactctggttacgatagcagtcagtgcactacagaactttgt 74
>RF00248;mir-148;ABQO010009990.1/1-63 9315:Macropus eugenii
(tammar wallaby)
Length = 63
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 agaagtcagtgcactacagaactttgt 60
|||||||||||||||||||||||||||
Sbjct: 36 agaagtcagtgcactacagaactttgt 62
>RF00248;mir-148;CU104777.4/16075-15990 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 12 acactccgactctgaatatgatagaagtcagtgcactacagaactttgt 60
||||||||||||||||| | | | |||||||||| |||||||||||||
Sbjct: 28 acactccgactctgaatgt--ttgcagtcagtgcattacagaactttgt 74
