miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;ABRQ01025756.1/6963-6877 9813:Procavia capensis
          (cape rock hyrax)
          Length = 87

 Score =  113 bits (57), Expect = 2e-25
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaactttg 60
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15 gaagttctgttatacactcaggctgtggctctgtgaaagtcagtgcatcacagaactttg 74

           
Query: 61 t 61
          |
Sbjct: 75 t 75

>RF00248;mir-148;AAWZ01034152.1/31480-31394 28377:Anolis
          carolinensis (green anole)
          Length = 87

 Score = 81.8 bits (41), Expect = 8e-16
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaactttg 60
          ||||||||||||||||||| | |||||||| | || ||||||||||||||||||||||||
Sbjct: 15 gaagttctgttatacactctgactgtggctatgtggaagtcagtgcatcacagaactttg 74

           
Query: 61 t 61
          |
Sbjct: 75 t 75

>RF00248;mir-148;AC149872.2/128226-128140 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 87

 Score = 65.9 bits (33), Expect = 5e-11
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaactttg 60
          ||||||||||||||||||| |||||||  |   || ||||||||||||||||||||||||
Sbjct: 15 gaagttctgttatacactccggctgtgagtaagtggaagtcagtgcatcacagaactttg 74

           
Query: 61 t 61
          |
Sbjct: 75 t 75

>RF00248;mir-148;AAVX01081695.1/240-153 7868:Callorhinchus milii
          (ghost shark)
          Length = 88

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 54/60 (90%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaactttg 60
          |||||||||| ||||||||||||||| |||   || ||||||||||||||||||||||||
Sbjct: 15 gaagttctgtcatacactcaggctgtagctaa-tggaagtcagtgcatcacagaactttg 73

>RF00248;mir-148;AANH01009869.1/35146-35060 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 87

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                     
Query: 2  aagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaactttg 60
          ||||||||| |||||||| | |||||  ||| ||  ||||||||||| |||||||||||
Sbjct: 16 aagttctgtgatacactctgactgtgaatctatgctagtcagtgcataacagaactttg 74

>RF00248;mir-148;AAVX01026781.1/2013-1926 7868:Callorhinchus milii
          (ghost shark)
          Length = 88

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 35 gaaagtcagtgcatcacagaactttgt 61
          |||||||||||||| ||||||||||||
Sbjct: 50 gaaagtcagtgcataacagaactttgt 76