miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28473_hsa-mir-149:mirbase
Length = 89
Score = 139 bits (70), Expect = 3e-34
Identities = 82/85 (96%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 gccggcgcccgggctctggctccgtgtcttcactcccgtg--tgtccgaggagggaggga 58
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gccggcgcccgagctctggctccgtgtcttcactcccgtgcttgtccgaggagggaggga 60
Query: 59 gggacgggggctgtgctggggcagc 83
|||||||||||||||||||||||||
Sbjct: 61 gggacgggggctgtgctggggcagc 85
>27053_eca-mir-149:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 79/82 (96%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 gccggcgcccgggctctggctccgtgtcttcactcccgtgt--gtccgaggagggaggga 58
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gccggcgcccaggctctggctccgtgtcttcactcccgtgtgtgtccgaggagggaggga 60
Query: 59 gggacgggggctgtgctggggc 80
||||||||||||||||||||||
Sbjct: 61 gggacgggggctgtgctggggc 82
>27758_mml-mir-149:mirbase
Length = 89
Score = 131 bits (66), Expect = 8e-32
Identities = 81/85 (95%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 gccggcgcccgggctctggctccgtgtcttcactcccgtgt--gtccgaggagggaggga 58
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gccggcgcccaagctctggctccgtgtcttcactcccgtgtttgtccgaggagggaggga 60
Query: 59 gggacgggggctgtgctggggcagc 83
|||||||||||||||||||||||||
Sbjct: 61 gggacgggggctgtgctggggcagc 85
>30244_ptr-mir-149:mirbase
Length = 81
Score = 131 bits (66), Expect = 8e-32
Identities = 78/81 (96%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 2 ccggcgcccgggctctggctccgtgtcttcactcccgtg--tgtccgaggagggagggag 59
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ccggcgcccgagctctggctccgtgtcttcactcccgtgcttgtccgaggagggagggag 60
Query: 60 ggacgggggctgtgctggggc 80
|||||||||||||||||||||
Sbjct: 61 ggacgggggctgtgctggggc 81
>30857_ppy-mir-149:mirbase
Length = 85
Score = 131 bits (66), Expect = 8e-32
Identities = 81/85 (95%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 gccggcgcccgggctctggctccgtgtcttcactcccgtgt--gtccgaggagggaggga 58
||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1 gccggcgcccgagctctggctccgtgtcttcactcccgtgtttgtccaaggagggaggga 60
Query: 59 gggacgggggctgtgctggggcagc 83
|||||||||||||||||||||||||
Sbjct: 61 gggacgggggctgtgctggggcagc 85
>34000_ssc-mir-149:mirbase
Length = 76
Score = 121 bits (61), Expect = 8e-29
Identities = 73/76 (96%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 7 gcccgggctctggctccgtgtcttcactcccgtgt--gtccgaggagggagggagggacg 64
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gcccaggctctggctccgtgtcttcactcccgtgtgtgtccgaggagggagggagggacg 60
Query: 65 ggggctgtgctggggc 80
||||||||||||||||
Sbjct: 61 ggggctgtgctggggc 76
>31884_mmu-mir-149:mirbase
Length = 66
Score = 101 bits (51), Expect = 7e-23
Identities = 63/66 (95%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 12 ggctctggctccgtgtcttcactcccgtgt--gtccgaggagggagggagggacgggggc 69
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ggctctggctccgtgtcttcactcccgtgtttgtccgaggagggagggagggacgggggc 60
Query: 70 tgtgct 75
|||||
Sbjct: 61 ggtgct 66
