miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00767;mir-150;AC126256.4/165920-166004 10090:Mus musculus
(house mouse)
Length = 85
Score = 91.7 bits (46), Expect = 8e-19
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 1 tctcccaacccttgtaccagtgctgtgcctcagtccctggtacaggcatggggg 54
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 16 tctcccaacccttgtaccagtgctgtgcctcagaccctggtacaggcctggggg 69
>RF00767;mir-150;AAKN02046407.1/61619-61703 10141:Cavia porcellus
(domestic guinea pig)
Length = 85
Score = 89.7 bits (45), Expect = 3e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 1 tctcccaacccttgtaccagtgctgtgcctcagtccctggtacaggcatggggggca 57
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct: 16 tctcccaacccttgtaccagtgctgtgcctcagacgctggtacaggcctggggggca 72
>RF00767;mir-150;ABRP01053071.1/5653-5737 132908:Pteropus vampyrus
(large flying fox)
Length = 85
Score = 81.8 bits (41), Expect = 8e-16
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 1 tctcccaacccttgtaccagtgctgtgcctcagtccctggtacaggcatggggggca 57
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 16 tctcccaacccttgtaccagtggtgtgctgcggtccctggtacaggcatggggggca 72
>RF00767;mir-150;AAFC03061346.1/17848-17932 9913:Bos taurus
(cattle)
Length = 85
Score = 60.0 bits (30), Expect = 3e-09
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 1 tctcccaacccttgtaccagtgctgtgcctcagtccctggtacagg 46
|||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 16 tctcccaacccttgtaccagtg-tgtgtctcagaccctggtacagg 60
>RF00767;mir-150;AAWZ01021503.1/15832-15746 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tctcccaacccttgtaccagtgc 23
|||||||||||||||||||||||
Sbjct: 14 tctcccaacccttgtaccagtgc 36
>RF00767;mir-150;AAVX01101656.1/398-309 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tctcccaacccttgtaccagtg 22
||||||||||||||||||||||
Sbjct: 18 tctcccaacccttgtaccagtg 39
>RF00767;mir-150;AALT01365871.1/7873-7792 42254:Sorex araneus
(European shrew)
Length = 82
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tctcccaacccttgtaccagtgctg 25
|||||||||||||||||||| ||||
Sbjct: 16 tctcccaacccttgtaccagcgctg 40
>RF00767;mir-150;AAPY01553607.1/1213-1296 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 42.1 bits (21), Expect = 7e-04
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 tctcccaacccttgtaccagtgctgtgcctcagtccctggtacaggcatggggggca 57
|||||||||||| ||||||| || || ||||| ||||||| |||| ||||||||||
Sbjct: 16 tctcccaaccctcgtaccagggccatg-ctcagaccctggtgcagggatggggggca 71
