miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00655;mir-28;AAGW01696220.1/775-851 9986:Oryctolagus cuniculus
(rabbit)
Length = 77
Score = 81.8 bits (41), Expect = 7e-16
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 tcgaggagctcacagtctagtatgtctca-gccctactagactgaggctccttgagg 56
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 12 tcgaggagctcacagtctagtatgtctcatcccctactagactgaagctccttgagg 68
>RF00917;mir-708;AAGU02375962.1/1414-1485 9785:Loxodonta africana
(African savanna elephant)
Length = 72
Score = 65.9 bits (33), Expect = 4e-11
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 1 tcgaggagctcacagtctagtatgtctca-gccctactagactgaggctccttgagg 56
||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct: 63 tcgaggagctcacagtctagtatgtgccatcccctactagactgaagctccttgagg 7
>RF00917;mir-708;ABRQ01255356.1/770-840 9813:Procavia capensis
(cape rock hyrax)
Length = 71
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1 tcgaggagctcacagtctagtatgtctcagccctactagactgaggctccttgagg 56
||||||||||||||||||||| ||| || ||| ||||||||||||||||| ||||
Sbjct: 62 tcgaggagctcacagtctagtgtgtgccatccccactagactgaggctcctggagg 7
>RF00655;mir-28;ABRQ01255356.1/842-767 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 1 tcgaggagctcacagtctagtatgtctcagccctactagactgaggctccttgagg 56
||||||||||||||||||||| ||| || ||| ||||||||||||||||| ||||
Sbjct: 12 tcgaggagctcacagtctagtgtgtgccatccccactagactgaggctcctggagg 67
>RF00917;mir-708;AAIY01415377.1/489-558 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 70
Score = 56.0 bits (28), Expect = 4e-08
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 1 tcgaggagctcacagtctagtatgtctcagccctactagactgaggctccttgagg 56
|||||||||||||||||||||| || || ||||||||||||| |||||||||||
Sbjct: 61 tcgaggagctcacagtctagtacgtgcca-ccctactagactggcgctccttgagg 7
