miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;ABRQ01001566.1/8621-8537 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 aggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaacttgg 59
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 aggttctgtgatacactcagactcgggctctggagcagtcagtgcatgacagaacttgg 73
>RF00248;mir-148;AAFR03029848.1/1033-1118 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 aggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaacttgg 59
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 15 aggttctgtgatacactccgacttagactctggagcagtcagtgcatgacagaacttgg 73
>RF00248;mir-148;CU104777.4/16075-15990 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gttctgtgatacactccgactc 24
||||||||||||||||||||||
Sbjct: 18 gttctgtgatacactccgactc 39
>RF00248;mir-148;CR450718.10/98432-98517 7955:Danio rerio
(zebrafish)
Length = 86
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 agtcagtgcatgacagaactt 57
|||||||||||||||||||||
Sbjct: 51 agtcagtgcatgacagaactt 71
