miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00731;mir-155;AADN02010688.1/48715-48779 9031:Gallus gallus
(chicken)
Length = 65
Score = 105 bits (53), Expect = 6e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtttttacctccgactgactcctacatgttagcattaac 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtttttacctctgaatgactcctacatgttagcattaac 63
Query: 61 a 61
|
Sbjct: 64 a 64
>RF00731;mir-155;ABRQ01311671.1/11595-11658 9813:Procavia capensis
(cape rock hyrax)
Length = 64
Score = 83.8 bits (42), Expect = 2e-16
Identities = 55/58 (94%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtttttacctccgactgactcctacatgttagcatta 58
||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtttttgcct-caactgactcctacatgttagcatta 60
>RF00731;mir-155;AY096003.1/159-223 10090:Mus musculus (house
mouse)
Length = 65
Score = 81.8 bits (41), Expect = 8e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtttttacctccgactgactcctacatgttagcattaac 60
||||||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct: 4 ttaatgctaattgtgataggggttttggcctctgactgactcctacctgttagcattaac 63
Query: 61 a 61
|
Sbjct: 64 a 64
>RF00731;mir-155;AAGU02298634.1/113-176 9785:Loxodonta africana
(African savanna elephant)
Length = 64
Score = 73.8 bits (37), Expect = 2e-13
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtttttacctccgactgactcctacatgttagcattaac 60
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtttttacct-caagcaactcctacatgttagcattaac 62
Query: 61 a 61
|
Sbjct: 63 a 63
>RF00731;mir-155;AAFR03036553.1/2910-2839 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 60.0 bits (30), Expect = 3e-09
Identities = 58/68 (85%), Gaps = 7/68 (10%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggttttt-------acctccgactgactcctacatgttag 53
||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtttttctttttgacttcgaactgactcctacatgttag 63
Query: 54 cattaaca 61
||||||||
Sbjct: 64 cattaaca 71
>RF00731;mir-155;AAWZ01036341.1/34181-34117 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 58.0 bits (29), Expect = 1e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtttttacctccgactgactcctacatgttagcatt 57
||||||||||||||||| || |||||| ||| | |||||||||||||||| |||||
Sbjct: 4 ttaatgctaatcgtgatgggagtttttgtctctggctgactcctacatgttggcatt 60
>RF00731;mir-155;AANH01000396.1/166544-166481 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggttttt 27
|||||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttttt 30
>RF00731;mir-155;AAPN01114009.1/559-624 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtttt 26
||||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtttt 29
>RF00731;mir-155;CU571081.7/40496-40433 7955:Danio rerio
(zebrafish)
Length = 64
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggttt 25
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;CAAE01014581.1/3640492-3640429 99883:Tetraodon
nigroviridis
Length = 64
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtt 24
||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;CAAB01005608.1/1273-1335 31033:Takifugu rubripes
Length = 63
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtt 24
||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;BAAE01057424.1/197-134 8090:Oryzias latipes
(Japanese medaka)
Length = 64
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttaatgctaatcgtgataggggtt 24
||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;AAGW01269088.1/344-408 9986:Oryctolagus cuniculus
(rabbit)
Length = 65
Score = 42.1 bits (21), Expect = 7e-04
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 13 gtgataggggtttttacctccgactgactcctacatgttagcattaaca 61
|||||||| | ||| | ||| ||| |||| |||||||||||||||||||
Sbjct: 16 gtgataggagatttcatctctgacagacttctacatgttagcattaaca 64
