miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;ABQF01033784.1/94537-94612 59729:Taeniopygia
guttata
Length = 76
Score = 107 bits (54), Expect = 1e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttggaattaaaatcaaaaccatcgaccgttgattgta 60
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgttgattgta 68
Query: 61 cc 62
||
Sbjct: 69 cc 70
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 69.9 bits (35), Expect = 3e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt-ggaattaaaatcaaaaccatcgaccgttgattgt 59
||||||||||||||||||||||||| |||||||||| |||||| |||||||||| |||
Sbjct: 9 aacattcaacgctgtcggtgagtttgggaattaaaaaagaaaccaccgaccgttgactgt 68
Query: 60 acc 62
|||
Sbjct: 69 acc 71
>RF00076;mir-181;AAWZ01041904.1/21191-21117 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 67.9 bits (34), Expect = 1e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttggaattaaaatcaaaaccatcgaccgttgattgta 60
|||||||||||||||||||||||||||||| | | | ||||||||||||||||| ||||
Sbjct: 9 aacattcaacgctgtcggtgagtttggaatcgagagc-aaaccatcgaccgttgactgta 67
Query: 61 cc 62
||
Sbjct: 68 cc 69
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 67.9 bits (34), Expect = 1e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttggaattaaaatcaaaaccatcgaccgttgattgta 60
||||||||||||||||||||||||| | || |||||||||||||||||||||| ||||
Sbjct: 9 aacattcaacgctgtcggtgagttt-gtgctacaatcaaaaccatcgaccgttgactgta 67
Query: 61 cc 62
||
Sbjct: 68 cc 69
>RF00076;mir-181;AADN02026326.1/5940-5866 9031:Gallus gallus
(chicken)
Length = 75
Score = 63.9 bits (32), Expect = 2e-10
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg-gaattaaaatcaaaaccatcgaccgttgattgt 59
|||||||||||||||||||||||||| ||| ||| | |||||||||||||||||| |||
Sbjct: 9 aacattcaacgctgtcggtgagtttgagaactaaga--aaaaccatcgaccgttgactgt 66
Query: 60 acc 62
|||
Sbjct: 67 acc 69
>RF00076;mir-181;AAVX01524458.1/119-46 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 61.9 bits (31), Expect = 8e-10
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttggaattaaaatcaaaaccatcgaccgttgattgta 60
||||||||||||||||||||||||||| ||| | || |||||||||||||||| ||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgggatttagat--gaaccatcgaccgttgactgta 66
Query: 61 cc 62
||
Sbjct: 67 cc 68
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttgg 27
|||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttgg 27
|||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;ABRQ01199017.1/7675-7601 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttgg 27
|||||||||||||||||||||||||||
Sbjct: 10 aacattcaacgctgtcggtgagtttgg 36
>RF00076;mir-181;CAAK05046427.1/2246-2169 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/65 (87%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttggaattaaa---atcaaaaccatcgaccgttgatt 57
||||||||||||||||||||||||| || |||| | ||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt-gagctaaatggaaaaaaaccatcgaccgttgatt 67
Query: 58 gtacc 62
|||||
Sbjct: 68 gtacc 72
>RF00076;mir-181;CAAE01007899.1/3116-3043 99883:Tetraodon
nigroviridis
Length = 74
Score = 54.0 bits (27), Expect = 2e-07
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttggaattaaaatcaaaaccatcgaccgttgattgta 60
|||||||||||||||||||||||||| | | || | ||||||||||||||||| ||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgacactgaa--cgaaaccatcgaccgttgactgta 66
Query: 61 cc 62
||
Sbjct: 67 cc 68
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttgg 27
|||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;BAAE01266276.1/154-232 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttgg 27
|||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;AAPN01414527.1/5237-5163 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BX649502.4/41327-41254 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABPN01054789.1/181-255 163638:Rhamphochromis esox
Length = 75
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01010005.1/225761-225835 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01064819.1/183-106 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01247698.1/2692-2765 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAVX01605662.1/457-382 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 aaaccatcgaccgttgattgtacc 62
||||||||||||||||||||||||
Sbjct: 47 aaaccatcgaccgttgattgtacc 70
>RF00076;mir-181;AAVX01060902.1/6914-6990 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAFR03041358.1/50589-50664 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt 25
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAWZ01014044.1/10482-10407 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt 25
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CR407590.7/46720-46647 7955:Danio rerio
(zebrafish)
Length = 74
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt 25
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt 25
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01009059.1/35-115 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt 25
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002581.1/17658-17586 31033:Takifugu
rubripes
Length = 73
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt 25
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AANH01003633.1/162880-162804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt 25
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 aaaaccatcgaccgttgattgtacc 62
|||||||||||||||||||||||||
Sbjct: 47 aaaaccatcgaccgttgattgtacc 71
>RF00076;mir-181;AANH01005494.1/52551-52630 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagttt 25
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002295.1/30499-30571 31033:Takifugu
rubripes
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aacattcaacgctgtcggtgagtttg 26
||||||||| ||||||||||||||||
Sbjct: 9 aacattcaamgctgtcggtgagtttg 34
