miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>27579_lla-mir-181b:mirbase
          Length = 110

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>28315_ggo-mir-181b:mirbase
          Length = 110

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>28485_hsa-mir-181b-1:mirbase
          Length = 110

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>30104_ppa-mir-181b:mirbase
          Length = 110

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>30253_ptr-mir-181b-1:mirbase
          Length = 108

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>30867_ppy-mir-181b:mirbase
          Length = 110

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>27769_mml-mir-181b-1:mirbase
          Length = 110

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtagacaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>28223_mne-mir-181b:mirbase
          Length = 110

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtagacaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>33246_bta-mir-181b-1:mirbase
          Length = 110

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgagtgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>34008_ssc-mir-181b-1:mirbase
          Length = 80

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 aacattcattgctgtcggtgggttgaactgtgtagacaagctcactgaacaatgaatgca 70

            
Query: 61 ac 62
          ||
Sbjct: 71 ac 72

>25976_gga-mir-181b-1:mirbase
          Length = 89

 Score =  107 bits (54), Expect = 8e-25
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 15 aacattcattgctgtcggtgggtttaactatgtggacaagctcactgaacaatgaatgca 74

            
Query: 61 ac 62
          ||
Sbjct: 75 ac 76

>26485_tgu-mir-181b-1:mirbase
          Length = 74

 Score =  107 bits (54), Expect = 8e-25
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 11 aacattcattgctgtcggtgggtttaactatgtggacaagctcactgaacaatgaatgca 70

            
Query: 61 ac 62
          ||
Sbjct: 71 ac 72

>27404_mdo-mir-181b:mirbase
          Length = 87

 Score =  107 bits (54), Expect = 8e-25
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 13 aacattcattgctgtcggtgggtttaactgtatggacaagctcactgaacaatgaatgca 72

            
Query: 61 ac 62
          ||
Sbjct: 73 ac 74

>31894_mmu-mir-181b-1:mirbase
          Length = 80

 Score =  107 bits (54), Expect = 8e-25
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 12 aacattcattgctgtcggtgggttgaactgtgtagaaaagctcactgaacaatgaatgca 71

            
Query: 61 ac 62
          ||
Sbjct: 72 ac 73

>32764_rno-mir-181b-1:mirbase
          Length = 110

 Score =  107 bits (54), Expect = 8e-25
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 36 aacattcattgctgtcggtgggttgaactgtgtagaaaagctcactgaacaatgaatgca 95

            
Query: 61 ac 62
          ||
Sbjct: 96 ac 97

>31511_oan-mir-181b:mirbase
          Length = 110

 Score = 91.7 bits (46), Expect = 5e-20
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                    
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatg 58
          |||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct: 27 aacattcattgctgtcggtgggtttaactctgaggacaagctcactgaacaatgaatg 84

>34612_fru-mir-181b-1:mirbase
          Length = 87

 Score = 83.8 bits (42), Expect = 1e-17
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          |||||||||||||||||||||||| |||||| ||||  |||||||||||| |||||||||
Sbjct: 14 aacattcattgctgtcggtgggtttaactgtatggaagagctcactgaacgatgaatgca 73

            
Query: 61 ac 62
          ||
Sbjct: 74 ac 75

>34759_tni-mir-181b-1:mirbase
          Length = 87

 Score = 83.8 bits (42), Expect = 1e-17
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          |||||||||||||||||||||||| |||||| ||||  |||||||||||| |||||||||
Sbjct: 14 aacattcattgctgtcggtgggtttaactgtatggaagagctcactgaacgatgaatgca 73

            
Query: 61 ac 62
          ||
Sbjct: 74 ac 75

>25805_xtr-mir-181b-1:mirbase
          Length = 83

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  aacattcattgctgtcggtgggttga 26
          ||||||||||||||||||||||||||
Sbjct: 13 aacattcattgctgtcggtgggttga 38

>25806_xtr-mir-181b-2:mirbase
          Length = 83

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 53/61 (86%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcattgctgtcggtgggttgaactgtgtggacaagctcactgaacaatgaatgca 60
          ||||||||||||||||||||||||| |  || | || ||||||| ||| |||||||||||
Sbjct: 14 aacattcattgctgtcggtgggttgta--gtttagaaaagctcattgatcaatgaatgca 71

           
Query: 61 a 61
          |
Sbjct: 72 a 72

>25977_gga-mir-181b-2:mirbase
          Length = 85

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtt 39

>26486_tgu-mir-181b-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 11 aacattcattgctgtcggtgggtt 34

>26734_cfa-mir-181b-2:mirbase
          Length = 60

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 1  aacattcattgctgtcggtgggtt 24

>27062_eca-mir-181b:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtt 39

>27770_mml-mir-181b-2:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtt 39

>28486_hsa-mir-181b-2:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtt 39

>30254_ptr-mir-181b-2:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 15 aacattcattgctgtcggtgggtt 38

>30868_ppy-mir-181b-2:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtt 39

>31895_mmu-mir-181b-2:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtt 39

>32765_rno-mir-181b-2:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 15 aacattcattgctgtcggtgggtt 38

>33247_bta-mir-181b-2:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtt 39

>34009_ssc-mir-181b-2:mirbase
          Length = 86

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 13 aacattcattgctgtcggtgggtt 36

>34330_dre-mir-181b-1:mirbase
          Length = 109

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 37 aacattcattgctgtcggtgggtt 60

>34331_dre-mir-181b-2:mirbase
          Length = 86

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 16 aacattcattgctgtcggtgggtt 39

>34613_fru-mir-181b-2:mirbase
          Length = 75

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 11 aacattcattgctgtcggtgggtt 34

>34760_tni-mir-181b-2:mirbase
          Length = 75

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aacattcattgctgtcggtgggtt 24
          ||||||||||||||||||||||||
Sbjct: 11 aacattcattgctgtcggtgggtt 34

>34332_dre-mir-181c:mirbase
          Length = 78

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  acattcattgctgtcggtgggtt 24
          |||||||||||||||||||||||
Sbjct: 13 acattcattgctgtcggtgggtt 35

>26736_cfa-mir-181d:mirbase
          Length = 64

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 1  aacattcattgttgtcggtgggttg 25

>27772_mml-mir-181d:mirbase
          Length = 137

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 36 aacattcattgttgtcggtgggttg 60

>28488_hsa-mir-181d:mirbase
          Length = 137

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 36 aacattcattgttgtcggtgggttg 60

>30256_ptr-mir-181d:mirbase
          Length = 136

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 35 aacattcattgttgtcggtgggttg 59

>30870_ppy-mir-181d:mirbase
          Length = 136

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 35 aacattcattgttgtcggtgggttg 59

>31512_oan-mir-181c:mirbase
          Length = 95

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          |||||||||| ||||||||||||||
Sbjct: 19 aacattcattactgtcggtgggttg 43

>31897_mmu-mir-181d:mirbase
          Length = 72

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 7  aacattcattgttgtcggtgggttg 31

>32767_rno-mir-181d:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 11 aacattcattgttgtcggtgggttg 35

>33249_bta-mir-181d:mirbase
          Length = 113

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 35 aacattcattgttgtcggtgggttg 59

>34011_ssc-mir-181d:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 9  aacattcattgttgtcggtgggttg 33

>34012_ssc-mir-181d:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aacattcattgctgtcggtgggttg 25
          ||||||||||| |||||||||||||
Sbjct: 9  aacattcattgttgtcggtgggttg 33