miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>27771_mml-mir-181c:mirbase
          Length = 110

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 86

           
Query: 61 c 61
          |
Sbjct: 87 c 87

>28316_ggo-mir-181c:mirbase
          Length = 110

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 86

           
Query: 61 c 61
          |
Sbjct: 87 c 87

>28487_hsa-mir-181c:mirbase
          Length = 110

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 86

           
Query: 61 c 61
          |
Sbjct: 87 c 87

>30105_ppa-mir-181c:mirbase
          Length = 110

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 86

           
Query: 61 c 61
          |
Sbjct: 87 c 87

>30255_ptr-mir-181c:mirbase
          Length = 110

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 86

           
Query: 61 c 61
          |
Sbjct: 87 c 87

>30869_ppy-mir-181c:mirbase
          Length = 110

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 86

           
Query: 61 c 61
          |
Sbjct: 87 c 87

>33248_bta-mir-181c:mirbase
          Length = 97

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 78

           
Query: 61 c 61
          |
Sbjct: 79 c 79

>34010_ssc-mir-181c:mirbase
          Length = 87

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 74

           
Query: 61 c 61
          |
Sbjct: 75 c 75

>31896_mmu-mir-181c:mirbase
          Length = 89

 Score =  113 bits (57), Expect = 1e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 aacattcaacctgtcggtgagtttgggcagctcagacaaaccatcgaccgttgagtggac 76

           
Query: 61 c 61
          |
Sbjct: 77 c 77

>32766_rno-mir-181c:mirbase
          Length = 106

 Score =  113 bits (57), Expect = 1e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 24 aacattcaacctgtcggtgagtttgggcagctcagacaaaccatcgaccgttgagtggac 83

           
Query: 61 c 61
          |
Sbjct: 84 c 84

>27405_mdo-mir-181c:mirbase
          Length = 72

 Score = 77.8 bits (39), Expect = 7e-16
 Identities = 59/63 (93%), Gaps = 2/63 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaac-ctgtcggtgagtttgggcagctca-ggcaaaccatcgaccgttgagtgg 58
          |||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 7  aacattcaacgctgtcggtgagtttgagcagctgaaggcaaaccatcgaccgttgagtgg 66

             
Query: 59 acc 61
          |||
Sbjct: 67 acc 69

>26732_cfa-mir-181a-2:mirbase
          Length = 60

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 1  aacattcaacgctgtcggtgagtttggg 28

>27060_eca-mir-181a:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>27620_sla-mir-181a-2:mirbase
          Length = 112

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>27768_mml-mir-181a-2:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>28222_mne-mir-181a-2:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>28314_ggo-mir-181a-2:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>28484_hsa-mir-181a-2:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>30103_ppa-mir-181a-2:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>30252_ptr-mir-181a-2:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>30866_ppy-mir-181a-2:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>31893_mmu-mir-181a-2:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 7  aacattcaacgctgtcggtgagtttggg 34

>32763_rno-mir-181a-2:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>33245_bta-mir-181a-2:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 39 aacattcaacgctgtcggtgagtttggg 66

>34007_ssc-mir-181a-2:mirbase
          Length = 80

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 1  aacattcaac-ctgtcggtgagtttggg 27
          |||||||||| |||||||||||||||||
Sbjct: 10 aacattcaacgctgtcggtgagtttggg 37

>25803_xtr-mir-181a-1:mirbase
          Length = 90

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 14 aacattcaacgctgtcggtgagtttgg 40

>25974_gga-mir-181a-1:mirbase
          Length = 104

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 20 aacattcaacgctgtcggtgagtttgg 46

>26483_tgu-mir-181a-1:mirbase
          Length = 73

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 11 aacattcaacgctgtcggtgagtttgg 37

>26731_cfa-mir-181a-1:mirbase
          Length = 62

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 1  aacattcaacgctgtcggtgagtttgg 27

>27061_eca-mir-181a-2:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>27403_mdo-mir-181a:mirbase
          Length = 64

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 3  aacattcaacgctgtcggtgagtttgg 29

>27578_lla-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>27767_mml-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>28221_mne-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>28313_ggo-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>28483_hsa-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>30102_ppa-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>30251_ptr-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>30865_ppy-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>31510_oan-mir-181a:mirbase
          Length = 127

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 30 aacattcaacgctgtcggtgagtttgg 56

>31892_mmu-mir-181a-1:mirbase
          Length = 87

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 14 aacattcaacgctgtcggtgagtttgg 40

>32762_rno-mir-181a-1:mirbase
          Length = 100

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 15 aacattcaacgctgtcggtgagtttgg 41

>33063_rno-mir-3570:mirbase
          Length = 117

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 84 aacattcaacgctgtcggtgagtttgg 58

>33244_bta-mir-181a-1:mirbase
          Length = 110

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 24 aacattcaacgctgtcggtgagtttgg 50

>34006_ssc-mir-181a-1:mirbase
          Length = 104

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 23 aacattcaacgctgtcggtgagtttgg 49

>34758_tni-mir-181a-2:mirbase
          Length = 91

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 1  aacattcaac-ctgtcggtgagtttgg 26
          |||||||||| ||||||||||||||||
Sbjct: 23 aacattcaacgctgtcggtgagtttgg 49