miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;ABRQ01065895.1/818-744 9813:Procavia capensis
          (cape rock hyrax)
          Length = 75

 Score =  113 bits (57), Expect = 2e-25
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9  aacattcaacctgtcggtgagtttgggcagcacaggcaaaccatcgaccgttgagtggac 68

           
Query: 61 c 61
          |
Sbjct: 69 c 69

>RF00076;mir-181;ABRO01089478.1/2095-2021 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 75

 Score = 89.7 bits (45), Expect = 3e-18
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                   
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtg 57
          |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||
Sbjct: 9  aacattcaacctgtcggtgagtttgggcagttcagacaaaccaccgaccgttgagtg 65

>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
          (tammar wallaby)
          Length = 77

 Score = 77.8 bits (39), Expect = 1e-14
 Identities = 59/63 (93%), Gaps = 2/63 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaac-ctgtcggtgagtttgggcagctca-ggcaaaccatcgaccgttgagtgg 58
          |||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 9  aacattcaacgctgtcggtgagtttgagcagctgaaggcaaaccatcgaccgttgagtgg 68

             
Query: 59 acc 61
          |||
Sbjct: 69 acc 71

>RF00076;mir-181;AAYZ01335535.1/4210-4136 9978:Ochotona princeps
          (American pika)
          Length = 75

 Score = 73.8 bits (37), Expect = 2e-13
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagtggac 60
          ||||||||||| ||||||||||||||    |||||||||||||||| |||||||||||||
Sbjct: 9  aacattcaaccagtcggtgagtttggaggcctcaggcaaaccatcggccgttgagtggac 68

           
Query: 61 c 61
          |
Sbjct: 69 c 69

>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 77

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 30/31 (96%), Gaps = 1/31 (3%)
 Strand = Plus / Plus

                                         
Query: 1  aacattcaac-ctgtcggtgagtttgggcag 30
          |||||||||| ||||||||||||||||||||
Sbjct: 9  aacattcaacgctgtcggtgagtttgggcag 39