miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33250_bta-mir-182:mirbase
Length = 111
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 4 tgcctcccgccgtttttggcaatggtagaactcacactggtgaggtaatgggatccggtg 63
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tgcctcccaccatttttggcaatggtagaactcacactggtgaggtaatgggatccggtg 70
Query: 64 gttctagacttgccaactatggtgcgagg 92
|||||||||||||||||||||||||||||
Sbjct: 71 gttctagacttgccaactatggtgcgagg 99
>27773_mml-mir-182:mirbase
Length = 112
Score = 151 bits (76), Expect = 1e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 1 gcttgcctcccgccgtttttggcaatggtagaactcacactggtgaggtaatgggatccg 60
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gcttgcctccccctgtttttggcaatggtagaactcacactggtgaggtaatgggatccg 67
Query: 61 gtggttctagacttgccaactatggtgcgagg 92
|||||||||||||||||||||| || ||||||
Sbjct: 68 gtggttctagacttgccaactacggggcgagg 99
>28489_hsa-mir-182:mirbase
Length = 110
Score = 151 bits (76), Expect = 1e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 1 gcttgcctcccgccgtttttggcaatggtagaactcacactggtgaggtaatgggatccg 60
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6 gcttgcctccccccgtttttggcaatggtagaactcacactggtgaggtaacaggatccg 65
Query: 61 gtggttctagacttgccaactatggtgcgagg 92
||||||||||||||||||||||||| ||||||
Sbjct: 66 gtggttctagacttgccaactatggggcgagg 97
>30257_ptr-mir-182:mirbase
Length = 109
Score = 151 bits (76), Expect = 1e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 1 gcttgcctcccgccgtttttggcaatggtagaactcacactggtgaggtaatgggatccg 60
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6 gcttgcctccctccgtttttggcaatggtagaactcacactggtgaggtaacaggatccg 65
Query: 61 gtggttctagacttgccaactatggtgcgagg 92
||||||||||||||||||||||||| ||||||
Sbjct: 66 gtggttctagacttgccaactatggggcgagg 97
>30871_ppy-mir-182:mirbase
Length = 112
Score = 143 bits (72), Expect = 2e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 1 gcttgcctcccgccgtttttggcaatggtagaactcacactggtgaggtaatgggatccg 60
|||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8 gcttgccttcccccgtttttggcaatggtagaactcacactggtgaggtaacaggatccg 67
Query: 61 gtggttctagacttgccaactatggtgcgagg 92
||||||||||||||||||||||||| ||||||
Sbjct: 68 gtggttctagacttgccaactatggggcgagg 99
>27063_eca-mir-182:mirbase
Length = 75
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 16 tttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttg 64
Query: 76 ccaactatggt 86
|||||||||||
Sbjct: 65 ccaactatggt 75
>31513_oan-mir-182:mirbase
Length = 100
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 73
Query: 78 aactatgg 85
||||||||
Sbjct: 74 aactatgg 81
>31898_mmu-mir-182:mirbase
Length = 75
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 16 tttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttg 75
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct: 5 tttttggcaatggtagaactcacaccggtaaggtaatgggacccggtggttctagacttg 64
Query: 76 ccaactatggt 86
|||||||||||
Sbjct: 65 ccaactatggt 75
>27406_mdo-mir-182:mirbase
Length = 71
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 7 tttggcaatggtagaactcacactggtgagataatggaatccggtggttctagacttgcc 66
Query: 78 aacta 82
|||||
Sbjct: 67 aacta 71
>34333_dre-mir-182:mirbase
Length = 68
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 4 tttggcaatggtagaactcacactggtgaggtagtcagatccggtggttctagacttgcc 63
Query: 78 aacta 82
|||||
Sbjct: 64 aacta 68
>34614_fru-mir-182:mirbase
Length = 72
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 tttggcaatggtagaactcacactggtgaggtagatggatccggtggttctagacttgcc 62
Query: 78 aacta 82
|||||
Sbjct: 63 aacta 67
>34761_tni-mir-182:mirbase
Length = 67
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 tttggcaatggtagaactcacactggtgaggtagatggatccggtggttctagacttgcc 62
Query: 78 aacta 82
|||||
Sbjct: 63 aacta 67
>25807_xtr-mir-182:mirbase
Length = 105
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 20 tttggcaatggtagaactcacactggtgagctatgaagatccggtggttctagacttgcc 79
Query: 78 aactatgg 85
||||||||
Sbjct: 80 aactatgg 87
>32768_rno-mir-182:mirbase
Length = 62
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 5 gcctcccgccgtttttggcaatggtagaactcacac 40
||||||| ||||||||||||||||||||||||||||
Sbjct: 22 gcctcccaccgtttttggcaatggtagaactcacac 57
>25507_pma-mir-182:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactgg 43
||||||||||||||||||||||||||
Sbjct: 12 tttggcaatggtagaactcacactgg 37
