miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00702;mir-182;ABGA01212254.1/9177-9093 9601:Pongo abelii
(Sumatran orangutan)
Length = 85
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 13 ccgtttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagac 72
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6 ccgtttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagac 65
Query: 73 ttgccaactatggtgcgagg 92
||||||||||||| ||||||
Sbjct: 66 ttgccaactatggggcgagg 85
>RF00702;mir-182;AAGU02431695.1/2312-2228 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 131 bits (66), Expect = 2e-30
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 13 ccgtttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagac 72
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ccgtgtttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagac 65
Query: 73 ttgccaacta 82
||||||||||
Sbjct: 66 ttgccaacta 75
>RF00702;mir-182;AAIY01755693.1/720-804 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 125 bits (63), Expect = 1e-28
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggaaatgggatccggtggttctagacttgcc 70
Query: 78 aactatggtgc 88
||||| |||||
Sbjct: 71 aactacggtgc 81
>RF00702;mir-182;AAYZ01439986.1/1308-1225 9978:Ochotona princeps
(American pika)
Length = 84
Score = 123 bits (62), Expect = 4e-28
Identities = 69/70 (98%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggta-tgggatccggtggttctagacttgcc 69
Query: 78 aactatggtg 87
||||||||||
Sbjct: 70 aactatggtg 79
>RF00702;mir-182;AABR04001545.1/73147-73063 10116:Rattus
norvegicus (Norway rat)
Length = 85
Score = 119 bits (60), Expect = 6e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 8 tcccgccgtttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttc 67
|||| |||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||
Sbjct: 1 tcccaccgtttttggcaatggtagaactcacaccggtaaggtaacgggacccggtggttc 60
Query: 68 tagacttgccaactatggtg 87
||||||||||||||||||||
Sbjct: 61 tagacttgccaactatggtg 80
>RF00702;mir-182;AAVX01309390.1/833-917 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 113 bits (57), Expect = 4e-25
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgagatagtgggatccggtggttctagacttgcc 70
Query: 78 aacta 82
|||||
Sbjct: 71 aacta 75
>RF00702;mir-182;BAAE01056755.1/3488-3572 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 105 bits (53), Expect = 1e-22
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggtagatggatccggtggttctagacttgcc 70
Query: 78 aacta 82
|||||
Sbjct: 71 aacta 75
>RF00702;mir-182;AANH01001637.1/239950-240034 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 85
Score = 69.9 bits (35), Expect = 5e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 77
||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcactctggtgggctggaaggatccggtggttctagacttgcc 70
Query: 78 aac 80
|||
Sbjct: 71 aac 73
>RF00702;mir-182;BAAF04047675.1/12269-12354 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 18 tttggcaatggtagaactcacactggtgaggtaatgg---gatccggtggttctagactt 74
||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcactctggtg--gtgctggaaggatccggtggttctagactt 68
Query: 75 gccaac 80
||||||
Sbjct: 69 gccaac 74
