miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00663;mir-183;ABRQ01279950.1/461-562 9813:Procavia capensis
          (cape rock hyrax)
          Length = 102

 Score =  115 bits (58), Expect = 6e-26
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaagggccata 60
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaagggccata 78

            
Query: 61 aa 62
          ||
Sbjct: 79 aa 80

>RF00663;mir-183;AAVX01005658.1/413-514 7868:Callorhinchus milii
          (ghost shark)
          Length = 102

 Score = 60.0 bits (30), Expect = 3e-09
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  tatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaagggccata 60
          ||||||||||||||||||||||||||| |  | |  |||||||||||||  |||||||||
Sbjct: 19 tatggcactggtagaattcactgtgaaaacacacaatcagtgaattaccatagggccata 78

            
Query: 61 aa 62
          ||
Sbjct: 79 aa 80

>RF00663;mir-183;CAAE01014715.1/320476-320375 99883:Tetraodon
          nigroviridis
          Length = 102

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tatggcactggtagaattcactgt 24
          ||||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactgt 42

>RF00663;mir-183;CAAB01003233.1/13960-13861 31033:Takifugu
          rubripes
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tatggcactggtagaattcactgt 24
          ||||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactgt 42

>RF00663;mir-183;BAAF04047675.1/11891-11992 8090:Oryzias latipes
          (Japanese medaka)
          Length = 102

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tatggcactggtagaattcactgt 24
          ||||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactgt 42

>RF00663;mir-183;AABS01000291.1/71818-71726 7719:Ciona
          intestinalis
          Length = 93

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tatggcactggtagaattcactg 23
          |||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41

>RF00663;mir-183;ABEP02026797.1/6738-6838 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tatggcactggtagaattcactg 23
          |||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41

>RF00663;mir-183;AADN02060414.1/1248-1299 9031:Gallus gallus
          (chicken)
          Length = 52

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 5  gcactggtagaattcactgtg 25
          |||||||||||||||||||||
Sbjct: 1  gcactggtagaattcactgtg 21