miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00657;mir-184;AC087557.20/93707-93625 10090:Mus musculus (house
mouse)
Length = 83
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 3 ccttatcacttttccagccagctttgtgactctaagtgttggacggagaactgataaggg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 ccttatcacttttccagccagctttgtgactctaagtgttggacggagaactgataaggg 72
Query: 63 taggtg 68
||||||
Sbjct: 73 taggtg 78
>RF00657;mir-184;AAPY01671193.1/13062-12979 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 105 bits (53), Expect = 7e-23
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ccccttatcacttttccagcc-agctttgtgactctaagtgttggacggagaactgataa 59
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 11 ccccttatcacttttccagcccagctttgtgactctgagtgttggacggagaactgataa 70
Query: 60 gggtaggtg 68
|||| ||||
Sbjct: 71 gggtgggtg 79
>RF00657;mir-184;AAHX01056180.1/5344-5426 10116:Rattus norvegicus
(Norway rat)
Length = 83
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 2 cccttatcacttttccagccagctttgtgactctaagtgttggacggagaactgataagg 61
||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 12 cccttatcagttttccagccagctttgtgactgtaaatgttggacggagaactgataagg 71
Query: 62 gta 64
|||
Sbjct: 72 gta 74
>RF00657;mir-184;AAQR01215444.1/887-805 30611:Otolemur garnettii
(small-eared galago)
Length = 83
Score = 97.6 bits (49), Expect = 2e-20
Identities = 66/69 (95%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 ccccttatcacttttccagcc-agctttgtgactctaagtgttggacggagaactgataa 59
||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct: 11 ccccttatcacttttccagcccagctgtgtgactcta-gtgttggacggagaactgataa 69
Query: 60 gggtaggtg 68
|||||||||
Sbjct: 70 gggtaggtg 78
>RF00657;mir-184;ABRQ01361613.1/429-346 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 95.6 bits (48), Expect = 6e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 cccttatcacttttccagcc-agctttgtgactctaagtgttggacggagaactgataag 60
|||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct: 12 cccttatcacttttccagcccagcttttggattctaagtgttggacggagaactgataag 71
Query: 61 ggtaggtg 68
||||||||
Sbjct: 72 ggtaggtg 79
>RF00657;mir-184;AAKN02055953.1/70434-70517 10141:Cavia porcellus
(domestic guinea pig)
Length = 84
Score = 89.7 bits (45), Expect = 4e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ccccttatcacttttccagcc-agctttgtgactctaagtgttggacggagaactgataa 59
||||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||
Sbjct: 11 ccccttatcacttttccagcccagctttgtgattgtcagtgttggacggagaactgataa 70
Query: 60 gggtaggtg 68
|||| ||||
Sbjct: 71 gggtgggtg 79
>RF00657;mir-184;AAYZ01335901.1/553-636 9978:Ochotona princeps
(American pika)
Length = 84
Score = 87.7 bits (44), Expect = 2e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 cccttatcacttttccagcc-agctttgtgactctaagtgttggacggagaactgataag 60
|||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||
Sbjct: 12 cccttatcacttttccagcccagctttgtgattctgactgttggacggagaactgataag 71
Query: 61 ggtaggtg 68
|||||||
Sbjct: 72 cgtaggtg 79
>RF00657;mir-184;AADN02038826.1/1382-1299 9031:Gallus gallus
(chicken)
Length = 84
Score = 63.9 bits (32), Expect = 2e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 ccccttatcacttttccagcc-agctttgtgactctaagtgttggacggagaactgataa 59
||||||||||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 11 ccccttatcacttttccagcccagcttcttcgctctgactgttggacggagaactgataa 70
Query: 60 gggt 63
||||
Sbjct: 71 gggt 74
>RF00657;mir-184;CAAB01001620.1/43106-43190 31033:Takifugu
rubripes
Length = 85
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 tgttggacggagaactgataagggta 64
||||||||||||||||||||||||||
Sbjct: 51 tgttggacggagaactgataagggta 76
>RF00657;mir-184;BAAF04041701.1/312-228 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 tgttggacggagaactgataagggta 64
||||||||||||||||||||||||||
Sbjct: 51 tgttggacggagaactgataagggta 76
>RF00657;mir-184;AAPN01074140.1/2574-2491 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 50.1 bits (25), Expect = 3e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 5 ttatcacttttccagcc-agctttgtgactctaagtgttggacggagaactgataagggt 63
||||||||||||||||| |||||| || |||| ||||||||||||| ||||||||||
Sbjct: 15 ttatcacttttccagcccagctttctggttctagccgttggacggagaattgataagggt 74
Query: 64 a 64
|
Sbjct: 75 a 75
>RF00657;mir-184;AAVX01446026.1/144-63 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 gtgttggacggagaactgataaggg 62
|||||||||||||||||||||||||
Sbjct: 47 gtgttggacggagaactgataaggg 71
>RF00657;mir-184;AAZO01006369.1/2415-2497 121224:Pediculus humanus
corporis (human body louse)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 tgttggacggagaactgataaggg 62
||||||||||||||||||||||||
Sbjct: 49 tgttggacggagaactgataaggg 72
>RF00657;mir-184;AANN01245614.1/108-185 9365:Erinaceus europaeus
(western European hedgehog)
Length = 78
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 37 agtgttggacggagaactgataagggt 63
|||| ||||||||||||||||||||||
Sbjct: 42 agtgctggacggagaactgataagggt 68
>RF00657;mir-184;AC147209.3/61848-61765 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tgttggacggagaactgataagg 61
|||||||||||||||||||||||
Sbjct: 50 tgttggacggagaactgataagg 72
>RF00657;mir-184;CR352253.9/159514-159598 7955:Danio rerio
(zebrafish)
Length = 85
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gttggacggagaactgataaggg 62
|||||||||||||||||||||||
Sbjct: 52 gttggacggagaactgataaggg 74
>RF00657;mir-184;CR356246.5/16955-16871 7955:Danio rerio
(zebrafish)
Length = 85
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gttggacggagaactgataaggg 62
|||||||||||||||||||||||
Sbjct: 52 gttggacggagaactgataaggg 74
>RF00657;mir-184;AANH01000282.1/6070-5986 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 85
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gttggacggagaactgataaggg 62
|||||||||||||||||||||||
Sbjct: 52 gttggacggagaactgataaggg 74
>RF00657;mir-184;BAAF04083164.1/7464-7548 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gttggacggagaactgataaggg 62
|||||||||||||||||||||||
Sbjct: 52 gttggacggagaactgataaggg 74
>RF00657;mir-184;AAGJ02116195.1/16137-16046
7668:Strongylocentrotus purpuratus
Length = 92
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 61 tggacggagaactgataaggg 81
>RF00657;mir-184;AABS01000135.1/138381-138283 7719:Ciona
intestinalis
Length = 99
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 68 tggacggagaactgataaggg 88
>RF00657;mir-184;AACT01014507.1/19083-19005 51511:Ciona savignyi
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 48 tggacggagaactgataaggg 68
>RF00657;mir-184;ABEP02024042.1/7891-7807 7739:Branchiostoma
floridae (Florida lancelet)
Length = 85
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 54 tggacggagaactgataaggg 74
>RF00657;mir-184;ABLF01000583.1/9706-9626 7029:Acyrthosiphon pisum
(pea aphid)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 50 tggacggagaactgataaggg 70
>RF00657;mir-184;BAAB01083504.1/1731-1651 7091:Bombyx mori
(domestic silkworm)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 50 tggacggagaactgataaggg 70
>RF00657;mir-184;AC185288.4/52827-52910 7425:Nasonia vitripennis
(jewel wasp)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>RF00657;mir-184;AADG05004767.1/16887-16970 7460:Apis mellifera
(honey bee)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>RF00657;mir-184;AAGE02019030.1/3534-3452 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72
>RF00657;mir-184;AAAB01008980.1/6487239-6487319 180454:Anopheles
gambiae str. PEST
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 50 tggacggagaactgataaggg 70
>RF00657;mir-184;AAPU01010071.1/6500-6418 7230:Drosophila
mojavensis
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72
>RF00657;mir-184;AAJJ01000543.1/40724-40802 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 48 tggacggagaactgataaggg 68
>RF00657;mir-184;ABJB010201781.1/2990-3072 6945:Ixodes scapularis
(black-legged tick)
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 tggacggagaactgataaggg 62
|||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72
