miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33255_bta-mir-187:mirbase
Length = 109
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 90
Query: 61 ggagggac 68
||||||||
Sbjct: 91 ggagggac 98
>27067_eca-mir-187:mirbase
Length = 61
Score = 121 bits (61), Expect = 6e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 2 tcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccg 60
Query: 62 g 62
|
Sbjct: 61 g 61
>28319_ggo-mir-187:mirbase
Length = 109
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 31 ctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 90
Query: 61 ggagggac 68
||||||||
Sbjct: 91 ggagggac 98
>28494_hsa-mir-187:mirbase
Length = 109
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 31 ctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 90
Query: 61 ggagggac 68
||||||||
Sbjct: 91 ggagggac 98
>30108_ppa-mir-187:mirbase
Length = 109
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 31 ctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 90
Query: 61 ggagggac 68
||||||||
Sbjct: 91 ggagggac 98
>34017_ssc-mir-187:mirbase
Length = 78
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 7 ctcgggctacaacacgggactcgggcgctgctctgacccctcgtgtcttgtgttgcagcc 66
Query: 61 ggagggac 68
||||||||
Sbjct: 67 ggagggac 74
>27778_mml-mir-187:mirbase
Length = 109
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 31 ctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtgttgcagcc 90
Query: 61 ggagggac 68
||||||||
Sbjct: 91 ggagggac 98
>28226_mne-mir-187:mirbase
Length = 109
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 31 ctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtgttgcagcc 90
Query: 61 ggagggac 68
||||||||
Sbjct: 91 ggagggac 98
>30876_ppy-mir-187:mirbase
Length = 109
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 31 ctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 90
Query: 61 ggagggac 68
||||||||
Sbjct: 91 ggagggac 98
>32773_rno-mir-187:mirbase
Length = 104
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 30 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 89
Query: 65 ggac 68
||||
Sbjct: 90 ggac 93
>31903_mmu-mir-187:mirbase
Length = 61
Score = 99.6 bits (50), Expect = 2e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccgg 62
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccgg 61
>27410_mdo-mir-187:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
||||||||||| |||| |||| ||| || || ||||||||||||||||||||||| |||
Sbjct: 15 ggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 74
Query: 65 gg 66
||
Sbjct: 75 gg 76
>25980_gga-mir-187:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 5e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
||||||||||| |||| ||| ||| || || ||||||||||||||||||||||| |||
Sbjct: 20 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 79
Query: 65 gg 66
||
Sbjct: 80 gg 81
>26488_tgu-mir-187:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 5e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
||||||||||| |||| ||| ||| || || ||||||||||||||||||||||| |||
Sbjct: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
Query: 65 gg 66
||
Sbjct: 65 gg 66
>31517_oan-mir-187:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 ccctcgtgtcttgtgttgcagccggagg 65
||||||||||||||||||||||| ||||
Sbjct: 46 ccctcgtgtcttgtgttgcagccagagg 73
>25810_xtr-mir-187:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 ccctcgtgtcttgtgttgcagcc 60
|||||||||||||||||||||||
Sbjct: 47 ccctcgtgtcttgtgttgcagcc 69
>34337_dre-mir-187:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagcc 60
|||||||||||||||||||||
Sbjct: 60 ctcgtgtcttgtgttgcagcc 80
>34617_fru-mir-187:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagcc 60
|||||||||||||||||||||
Sbjct: 62 ctcgtgtcttgtgttgcagcc 82
>34764_tni-mir-187:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagcc 60
|||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagcc 60
